Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g5583 ATGGAGAGAGAATTAATATCAAGAGAAAGCATCAAACCCTCTAAACCCACACCTTGCCACCACAGAATCCATCACCTCTCCTTCATAGACCACATCGTTGCACGAAACTACATCCCAGCAATTTACTTTTACCCCAACAACAACGAAGAAGACGTAACAACCAAAATATCAAGGCTCAAAAAATCGTTATCCAAAGTTCTAACCATATACTACCCTTTTGCAGGTACCTACAGGGACCAGCGATCCATCCACTGCAACGACCGAGGCGTCACATTTCTCGTTTCAACCGTCAAAACCAACCTCTCATATATTCTCAACAACCCCTCCGAATCGCTTCTGAACCCTCTCTTCCCCGATGGCCTTCAGTGGAAGGACATGGGTTCAGATGCCACCATATTAGCCATCCAAATCAACCYATTCTCTTGCGGCGGAATCGCCATTGCCGTCTGCTTGTCTCACAAACTCGGCGACGGTTCCACTCTCTTCAACTTCGTCAATGACTGGGCTACTATCAACCGAACCAATAATCAACTACCTTTCCCGCCGGATCTTGTTGCGGGATCTTCTCTATTCCCGCAAGAGGACTTGCCGGTCTTTCCTGAAATCTCGTTCACGAAGCAAAACACTGTGTGTGCAAGACTCGTGTTCGAGGGTTCCAAGATCGAGTCCCTGAAGGAAACGGTGAAATCCAACGGCGTTGAGAACCCGTCGCGGGTTGAAGTTGTGATTGGAATGATCTACAAGCGSGCCGTTTCTGCTTTGGGGCTTGGCGGCAACGTTAACGCGCCTCTTTTGCTTGTTGCCGCGAATCTCCGAAGGAGAATGGTTCCTCCGCTTCCGGAGAAGTCCATAGGGAACTGGGTCTGGTCGTTCCCCGTAGTGTCAAAGAAAAAGGAGGAAGGTGCAGGGTTGCACGAGTTGGTGGAAGAAACGAGGGAAGGTTTATCMGAGTTGTGCGAGAAGAGTGTGAAGAAGTTTGGGGATAAGGAATTTGTGATTGAGTTCCTAAGGAAGGCTACTACGGCGAGGAGYAGTAGTCCGATTGGATCGGAGAAGAGAGTGTTCTTCTTTGCGAGCTGGTGTAGGGTTCCGACGTATGAGGTGGATTTTGGATGGGGGAAGGCGGCGTGGGTGACGAGTGTTGGGTCTCCGGTSAAGAACAGTGTGGTTTTGATGGATGCCAGAGATGGGAATGGCGTTGAAGCTCTTGTCAGCATGGAGGAGCAAGATTTGGTGGTCTTTCAGCGTGATTTCGAGCTCCTTCAATATGCTTCTATTAATCCAAAGGATGGAAATGGAAGTGATATCAAGAGAYAGCATCAAACCGTGTTCCCCCACTCCAACTCACCTCAGAAACTACCCTCTCTCCTTGTTCGACAATGCCAATCTCCCGACGAAGCCGCCAAAATATCGCTTCTCAAGAAATCCCTATCCCAAGCTCTATGCAWATACTACCCTTTTGCCGGCAGGTTCAAAGATCCAACCTCCGTACACTGCAACGATGAAGGCGTCTCRCTTGTGGTCACCAGAATCAAAACCAAGAATCTCTCCAACATTCTCCGCAACCCAACGGACGCCCTCTTGAGCCCCTTGTTCCCCGACSAGCTGCAGTGGAAGGATATGGGCTTGGACTCGAGCTTGTTGGCAGTTCAAATTAACTGTTTCGCGTGCGGCGGAATGGCCATAACCGTATGCATGTSTCACAAGGTTGGTGACGCTTCCACTTTGTTCAACTTCTTCAACGATTGGTCAACGCTCACCCAACAACCTCACACCACAGTAGCCTTACCCCATGTTGGAGCTTCGCTTTTCCCACAAACCCACTTCCCACTTCCCCGCCAATATTCCTTCGTCCCTCACCACAACATGGTGTGTAGAAGGCTTGTGTTCGAAGGTTCCAYAATTGATTCCCTTAAGGCCTTGGTTTCGTCGTCGTCGTCTTCTCAGAAGGTGGAGAACCCTACTAGGTTTGAGGTTGTGGTTGCACTGATTTACAAGTGTGCTGTTTCGGCGTTGGGATTGAGTGTTAGCAACACGCTCTTGCGTGRTGCCATCAACTTCCGCAAGAGAATGATTCCTCCGCTGCCGGACAAGTCCTTAGGGAACTTGGTTTCGAGCTTCTATGCTTCCTCCATGGACAATGATGAAGTGGAGTTGCACGAGTTGGTGACCAAAACAAGAGAAGGGCTAGCTTTGTTTTGTGACGAGTTTTCGGCGTATGAAGCGGATTTTGGGTGGGGGAGGCCAGTGTGGGTGACCACTGTTTTGTGTCCTGTGAAGAACAGCGTGGTTTTGATGGATACYAGAGATGGYAAAGGGATTGAAGCGGTTGTGTGCATGCTTGACAAAGACATGGCCATGTTTGAGCGTCACGTTCATCTTCTTCGCTATGCTTCTCTTGAACCAAACCGTTGGACATGCTCATCATGTTCTTGA 2436 0.491 MERELISRESIKPSKPTPCHHRIHHLSFIDHIVARNYIPAIYFYPNNNEEDVTTKISRLKKSLSKVLTIYYPFAGTYRDQRSIHCNDRGVTFLVSTVKTNLSYILNNPSESLLNPLFPDGLQWKDMGSDATILAIQINXFSCGGIAIAVCLSHKLGDGSTLFNFVNDWATINRTNNQLPFPPDLVAGSSLFPQEDLPVFPEISFTKQNTVCARLVFEGSKIESLKETVKSNGVENPSRVEVVIGMIYKRAVSALGLGGNVNAPLLLVAANLRRRMVPPLPEKSIGNWVWSFPVVSKKKEEGAGLHELVEETREGLSELCEKSVKKFGDKEFVIEFLRKATTARSSSPIGSEKRVFFFASWCRVPTYEVDFGWGKAAWVTSVGSPVKNSVVLMDARDGNGVEALVSMEEQDLVVFQRDFELLQYASINPKDGNGSDIKRXHQTVFPHSNSPQKLPSLLVRQCQSPDEAAKISLLKKSLSQALCXYYPFAGRFKDPTSVHCNDEGVSLVVTRIKTKNLSNILRNPTDALLSPLFPDXLQWKDMGLDSSLLAVQINCFACGGMAITVCMXHKVGDASTLFNFFNDWSTLTQQPHTTVALPHVGASLFPQTHFPLPRQYSFVPHHNMVCRRLVFEGSXIDSLKALVSSSSSSQKVENPTRFEVVVALIYKCAVSALGLSVSNTLLRXAINFRKRMIPPLPDKSLGNLVSSFYASSMDNDEVELHELVTKTREGLALFCDEFSAYEADFGWGRPVWVTTVLCPVKNSVVLMDTRDGKGIEAVVCMLDKDMAMFERHVHLLRYASLEPNRWTCSSCS* 812
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g5583 811 Gene3D - 620 736 IPR023213 -
Amo13g5583 811 Gene3D - 737 797 IPR023213 -
Amo13g5583 811 Gene3D - 206 425 IPR023213 -
Amo13g5583 811 Gene3D - 427 611 IPR023213 -
Amo13g5583 811 Gene3D - 2 198 IPR023213 -
Amo13g5583 811 PANTHER F21J9.9 5 429 - -
Amo13g5583 811 PANTHER F21J9.9 462 803 - -
Amo13g5583 811 PANTHER HXXXD-TYPE ACYL-TRANSFERASE FAMILY PROTEIN 5 429 - -
Amo13g5583 811 PANTHER HXXXD-TYPE ACYL-TRANSFERASE FAMILY PROTEIN 462 803 - -
Amo13g5583 811 Pfam Transferase family 465 727 - -
Amo13g5583 811 Pfam Transferase family 4 420 - -
Amo13g5583 811 Pfam Transferase family 737 793 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g5583 Amo-Chr13 157547512 157554317 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g5583 472 790 Monolignol Biosynthesis Gene Families AT5G48930 24.543 1.11e-16 81.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g5583 - - gmx:100806928 484.182
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g5583 13 157547512 157554317 Amo13g5583 13 157547512 157554317 ECH