Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g5582 ATGGATAATAATGGTTGCTTGCCATGTACACGTCGTGAAGGTTTTCCYGCTGGACTGAGAGTTCTGGTTGTTGATGATGATCCAACATGGCTRAAGATCCTTGAAAAGATGCTCAAGAAGTGCTCTTACCAAGTGACTACATGTTGTTTGGCAACGGAGGCTCTGAAGAAGCTTCGAGAGAGGAAAGATGCATTCGACATAGTGATCAGCGATGTAAACATGCCTGACATGAATGGATTCAAGCTTCTTGAGCATGTTGGACTTGAGATGGATCTGCCTGTCATTATGATGTCTGTTGATGGAGAAACAAGCAGGGTAATGAAAGGTGTTCAACATGGAGCATGTGATTATCTCCTCAAGCCTATAAGGATGAAAGAACTGCGAAACATATGGCAGCATGTCTTGAGAAAAAGGATTCATGAAGGGAGAGAGTTTGAAAGCCTAGAGGGCTTTGATTTTGAGGGCATTCATCACTTGATGAGAAATGGACAAGATCAATGTTGTGATGATGTGAGCCTCTTTGCATTAGAAGATTGTATCAGTTCAACAAGGAAAAGGAAAGATGCAGATAARAAACACGACGAAAGAGAATTCGGAGATTCTTCTTCAACCAAGAAAGCTAGAGTGGTTTGGTCTGTGGATCTTCATCAGAAGTTTGTCCAAGCAGTGAATCAGATTGGATTTGATAAAGTTGGTCCCAAGAAAATTCTAGATTTGATGAATGTACCATGGCTTACCAGAGAAAATGTTGCTAGTCATTTGCAGAAATACAGGCTCTACTTGAGTAGGTTGCAGAAGCAGAGAGATCAGAAGAAATGCTCRTCAAGTGGAATAAAGAATCCGGATTTGAATCCGAAAGATCCRGGAAGCTCTAGTATTAAGAACTCTATGAACAAGCAACAAAATGTAGTTTCAATTGACGGCTTCAGATGTCCAAATAATGGATTAGTGCAACTTCATGAATCRGATTTCACTGTGTCAGAGCTTAATAAAACAGAACAAAGAAGAGCACTAGCTACTAATAACATTATTCCMGATCCAAACATGACAAAGGTTTCACAGATAGTCCTTAATCAAACCTTTTCACCTCTCAATTCAGAAGGAAACATTGAAGTATTTGATTGCACCATACCAACACAGTACACTTGGAATCAAGTTCCCAAAAGGAAACTCCAAGATGATCCTAAATCACAATCAATTGCTTCAATGGTATCCAGTCCCTCTGCTGCAAGCTCAATAGCTTCTTCTGCAGTTGACAACATTATTCCGGTTCAGTCCAAAAGCCTTATGGTGAATGATCAATCTTCAGTCACTTCAAATCCGGGCTTGAAAACACAGGAATTTGATGCCAGTCTCATTCCTGAWCTGGAATTTTACCAGCAAAACCTACTCTGGGGTGGCGAGGCGGCTTTTTCGCCTTTGGAGGAGGACTTGAATTTCTTTTTGCTACAAAGTGAATGCTACAATGACATGAACTTTGGTATGCACAYCATAGACARGTCAGACTATTATTACGATCCAGGGCTTARTGCTGATGTTCCAAACCATTTATTATACGATTCAGCAGATTATTCAGTAGTAGATCAAAGTCTATTCATAGCATGA 1605 0.3988 MDNNGCLPCTRREGFPAGLRVLVVDDDPTWLKILEKMLKKCSYQVTTCCLATEALKKLRERKDAFDIVISDVNMPDMNGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVLRKRIHEGREFESLEGFDFEGIHHLMRNGQDQCCDDVSLFALEDCISSTRKRKDADKKHDEREFGDSSSTKKARVVWSVDLHQKFVQAVNQIGFDKVGPKKILDLMNVPWLTRENVASHLQKYRLYLSRLQKQRDQKKCSSSGIKNPDLNPKDPGSSSIKNSMNKQQNVVSIDGFRCPNNGLVQLHESDFTVSELNKTEQRRALATNNIIPDPNMTKVSQIVLNQTFSPLNSEGNIEVFDCTIPTQYTWNQVPKRKLQDDPKSQSIASMVSSPSAASSIASSAVDNIIPVQSKSLMVNDQSSVTSNPGLKTQEFDASLIPXLEFYQQNLLWGGEAAFSPLEEDLNFFLLQSECYNDMNFGMHXIDXSDYYYDPGLXADVPNHLLYDSADYSVVDQSLFIA* 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g5582 534 Pfam Response regulator receiver domain 21 130 IPR001789 GO:0000160
Amo13g5582 534 SMART REC_2 19 131 IPR001789 GO:0000160
Amo13g5582 534 Pfam Myb-like DNA-binding domain 208 258 IPR001005 -
Amo13g5582 534 ProSiteProfiles Response regulatory domain profile. 20 135 IPR001789 GO:0000160
Amo13g5582 534 Gene3D - 202 270 - -
Amo13g5582 534 MobiDBLite consensus disorder prediction 276 298 - -
Amo13g5582 534 SUPERFAMILY Homeodomain-like 204 263 IPR009057 -
Amo13g5582 534 SUPERFAMILY CheY-like 18 143 IPR011006 -
Amo13g5582 534 MobiDBLite consensus disorder prediction 270 298 - -
Amo13g5582 534 CDD REC_typeB_ARR-like 21 135 - -
Amo13g5582 534 Gene3D - 19 169 - -
Amo13g5582 534 PANTHER TWO-COMPONENT RESPONSE REGULATOR 410 506 - -
Amo13g5582 534 PANTHER TWO-COMPONENT RESPONSE REGULATOR 8 396 - -
Amo13g5582 534 PANTHER TWO-COMPONENT RESPONSE REGULATOR 410 506 IPR045279 GO:0009736
Amo13g5582 534 PANTHER TWO-COMPONENT RESPONSE REGULATOR 8 396 IPR045279 GO:0009736
Amo13g5582 534 PIRSF RR_ARR_type-B 2 485 IPR017053 GO:0003677|GO:0003700|GO:0009736
Amo13g5582 534 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 206 259 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g5582 Amo-Chr13 157544652 157547421 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g5582 15 271 Response Regulator Gene Family AT2G25180 54.545 1.66e-82 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Amo13g5582 Response_reg 1.6e-24 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g5582 - K14491 gmx:100806394 635.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g0959 20 16178045 16181743 Amo13g5582 13 157544652 157547421 PCT
Amo10g0529 10 5614364 5617749 Amo13g5582 13 157544652 157547421 PCT
Amo13g5582 13 157544652 157547421 Amo20g0959 20 16178045 16181743 PCT
Amo13g5582 13 157544652 157547421 Amo10g0529 10 5614364 5617749 PCT