Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g5576 ATGACGTCACGTAGCGGCGGCAGCAGCAGCCGTGCTGGTGGCGGGACGAAGGTGGGGAAATACGAGATGGGTCGGACACTTGGAGAGGGAAACTTCGCAAAGGTGAAGTTCGCCAGGAACTTGGAGACAGGGGAGAACGTGGCCATCAAGATCCTTGACAAAGAGAAAGTTCTCAAGCACAAGATGATAAACCAGATAAAACGAGAAATATCCACAATGAAACTGGTTAGACACCCCAATATCATACGTTTGCATGAGGTGATGGCTAGCAAGACAAAGATATACATTGTGTTGGAACTTGTGACCGGCGGGGAACTGTTTGATAAAATTGCAAGCCAAGGGAGGCTGAAAGAAGACGAAGCAAGGAAATATTTTCAGCAGCTTATATGTGCTGTCGATTACTGTCACAGTAGAGGTGTTTGCCACAGAGACTTGAAGCCTGAGAATTTGTTGCTGGGTGCTGATGGAGGGCTTAAAGTGTCAGATTTTGGATTGAGTGCACTGCCGCAACAAGTTCGAGAAGATGGGCTGCTTCACACAACATGTGGTACGCCAAATTATGTTGCCCCAGAGGTGATAAAAAATAAAGGCTATGATGGTGCAAAGGCTGATCTCTGGTCATGTGGTGTTATTCTCTTTGTTTTAATGGCTGGTTATTTGCCCTTTGAAGACAACAACCTTATGAATTTATATAAAAAGATTTTCAATGCTCAGTACAATTGTCCTCCATGGTTTTCTTCAAGTGCCAAAAAACTAATCAAGAAAATCCTCGATCCCAATCCTGCTACGCGGATTACAATTCCTGAGTTAATTGAGAACGAGTGGTTCAAGAAGGGGTACAAGCCTCCTCGATTTGAGCAGGAAGATGTCAGTCTTGATGATATAAATGCTATATTCAGTGAAGCAATGGATGCACACAATCTTGTTGTGGAAAGGCGAGAAGAGGAGTCAGTGGCTCCTGTGACTATGAATGCATTTGAGCTTATCTCTACATCCCAGGGACTCAACCTCAGAAATCTTTTCCAGAAGCAGATGGGACTTGTTAAAAGGGAGACAAGATTCACATCCAAATGTTCAGCAAATGAGATAATCTCAAAAATTGAGCAGGCTGCAGGTCCTCTGGGTTTTGATGTTAAGAAGAACAACACTAAGTTGAAGATTCAAGGGGAAAAAAGTGGACGAAAAGGTCATCTAGCAGTAGCAACTGAGATCTTGGAGGTGGCCCCTCAACTTAACATGGTTGAGCTTCGAAAATGTGGAGGAGACACATTGGAATTTCATAAGTTCTATAAGAATCTATCTGTTGGCCTGAAAGACATCATTTGGAAAGCAGAACCTATTGATGAAGATTTGGATGCAGATACAGGTACAGGAAAAGGTGCAGCTAGTAATTCTAAATAA 1401 0.4311 MTSRSGGSSSRAGGGTKVGKYEMGRTLGEGNFAKVKFARNLETGENVAIKILDKEKVLKHKMINQIKREISTMKLVRHPNIIRLHEVMASKTKIYIVLELVTGGELFDKIASQGRLKEDEARKYFQQLICAVDYCHSRGVCHRDLKPENLLLGADGGLKVSDFGLSALPQQVREDGLLHTTCGTPNYVAPEVIKNKGYDGAKADLWSCGVILFVLMAGYLPFEDNNLMNLYKKIFNAQYNCPPWFSSSAKKLIKKILDPNPATRITIPELIENEWFKKGYKPPRFEQEDVSLDDINAIFSEAMDAHNLVVERREEESVAPVTMNAFELISTSQGLNLRNLFQKQMGLVKRETRFTSKCSANEIISKIEQAAGPLGFDVKKNNTKLKIQGEKSGRKGHLAVATEILEVAPQLNMVELRKCGGDTLEFHKFYKNLSVGLKDIIWKAEPIDEDLDADTGTGKGAASNSK* 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g5576 466 Pfam NAF domain 320 380 IPR004041 GO:0007165
Amo13g5576 466 Gene3D Phosphorylase Kinase; domain 1 11 100 - -
Amo13g5576 466 ProSiteProfiles Protein kinase domain profile. 21 276 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo13g5576 466 ProSitePatterns Serine/Threonine protein kinases active-site signature. 140 152 IPR008271 GO:0004672|GO:0006468
Amo13g5576 466 ProSiteProfiles NAF domain profile. 318 342 IPR018451 GO:0007165
Amo13g5576 466 CDD STKc_SnRK3 20 275 - -
Amo13g5576 466 MobiDBLite consensus disorder prediction 1 20 - -
Amo13g5576 466 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 15 448 - -
Amo13g5576 466 ProSitePatterns Protein kinases ATP-binding region signature. 27 50 IPR017441 GO:0005524
Amo13g5576 466 Pfam Protein kinase domain 21 276 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo13g5576 466 SUPERFAMILY Protein kinase-like (PK-like) 18 292 IPR011009 -
Amo13g5576 466 SMART serkin_6 21 276 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo13g5576 466 PANTHER SERINE/THREONINE KINASE 15 448 - -
Amo13g5576 466 Gene3D Transferase(Phosphotransferase) domain 1 101 283 - -
Amo13g5576 466 Gene3D Kinase associated domain 1, KA1 318 443 - -
Amo13g5576 466 CDD CIPK_C 324 439 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g5576 Amo-Chr13 157441770 157447119 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g5576 16 450 CBL-interacting serine-threonine protein kinases AT1G01140 68.934 0.0 647
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Amo13g5576 Pkinase 1e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g5576 - - adu:107482008 913.294
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g5576 13 157441770 157447119 Amo13g5576 13 157441770 157447119 ECH