Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g5571 ATGAATCAAAAGCAGCTTGAGCCACTACCTTTGCTAAGCAGCTTCCTTGGTTCTTCAACATGTTCATCATCAGAACTAAATCAAAATCTGAAAGAAGATGTGACAGTGGCCTTGCACATTGGGCTCCCTGACAATTCCCATGATAATCAAAATGTAGAACCTCTCCAAGCTCCAAATAATTACTGGATACCAACAGAAGAGCAGATTATAATTGGTTTCAGCCACTTCTCATGTCCTGTTTGCCCAAAAACCTTCAACCGCTACAACAATCTTCAGATGCATATGTGGGGACATGGGTCAGAATACAGAAGAGGGCCAGAGTCACTGAAAAGAACACATCCAAGGCCATTGTTGGAGATAGCATGCTACTGCTGCAAAGGAGGGTGCAAGAACAACATAGAGCATCCAAGAGCAAAGCCTCTGAAAGATTTCAGAACACTGCAAACACACTATAAGAGGAAGCATGGACCCAAACCCTTCTCATGCCGCAAGTGTGCAAAGAATCTGGCTGTGAAAGGTGACTGGAGAACTCATGAGAAGAACTGTGGCAAACGCTGGCTTTGTCTTTGTGGCTCTGACTTCAAACACAAGAGGTCTCTTAAGGATCATATCAAAGCTTTTGGCTTTGACTGGAAGCGAAAAGAATTTTAG 651 0.4347 MNQKQLEPLPLLSSFLGSSTCSSSELNQNLKEDVTVALHIGLPDNSHDNQNVEPLQAPNNYWIPTEEQIIIGFSHFSCPVCPKTFNRYNNLQMHMWGHGSEYRRGPESLKRTHPRPLLEIACYCCKGGCKNNIEHPRAKPLKDFRTLQTHYKRKHGPKPFSCRKCAKNLAVKGDWRTHEKNCGKRWLCLCGSDFKHKRSLKDHIKAFGFDWKRKEF* 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g5571 216 PANTHER TESTA 1 PROTEIN, PUTATIVE-RELATED 5 209 - -
Amo13g5571 216 PANTHER ZINC FINGER PROTEIN WIP2 5 209 IPR043584 GO:0003700|GO:0010468
Amo13g5571 216 ProSitePatterns Zinc finger C2H2 type domain signature. 78 98 IPR013087 -
Amo13g5571 216 Gene3D Classic Zinc Finger 139 211 - -
Amo13g5571 216 ProSiteProfiles Zinc finger C2H2 type domain profile. 76 103 IPR013087 -
Amo13g5571 216 SUPERFAMILY beta-beta-alpha zinc fingers 71 99 IPR036236 -
Amo13g5571 216 Gene3D Classic Zinc Finger 75 98 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g5571 Amo-Chr13 157405356 157406936 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g5571 1 208 C2H2 Transcription Factor Family AT1G34790 57.787 5.54e-93 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Amo13g5571 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g5571 - - cam:101514022 349.747