Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g5570 ATGAAGCTTTCTTCAGCTGATTTTTGTCCTCCACCCCCGGAAGGAGAAAAGCGCGTTTTGGATTCAGAACTTTGGCATGCATGTGCTGGTCCCCTTGTTTCTTTACCAATTGTTGGAAGCCGAGTTGTGTACTTTCCACAAGGTCACAGTGAACAGGTTGCTGTATCAACCAACAGGGAAGTGGATGCCCAAATTCCTAACTATCCAAGCTTGCCTCCCCAACTTATCTGTCAACTTCATAATGTGACTATGCATGCTGATATTGAGACAGATGAAGTATATGCACAAATGACCTTGCAACCTCTGAATCCTCAAGAGCAAAAGGAGGCATACCTTCCAGCAGAGTTGGGCACTCCAAGTAAACAGCCTACAAACTACTTTTGCAAAACTTTGACAGCCAGTGACACAAGCACGCATGGAGGGTTCTCTGTTCCTCGCCGTGCAGCTGAAAAAGTGTTTCCTCCTTTGGACTTCACCCAACAGCCTCCTGCTCAAGAGTTAATTGCAAGGGATTTGCATGGTAATGAATGGAAATTCAGACATATCTTTCGCGGCCAACCCAAAAGGCATCTATTGACAACGGGATGGAGTGTCTTCGTGAGTGCTAAAAGACTTGTTGCTGGTGATGCTGTGCTGTTTATCTGGAATGAAAAGAATCAATTGCTTCTTGGCATTCGCCGTGCTAATCGGCCACAACCTGTGATGCCTTCCTCAGTTTTGTCTAGTGATAGCATGCACTTGGGGCTTCTTGCTGCTGCAGCTCATGCAGCTGCAACCAATAGTCGATTCACCATTTTCTATAACCCACGTGCTTGCCCATCAGACTTTGTCATACCCTTGGCAAAGTATGTTAAAGCTGTGTATCATACTCGAGTCTCAGTTGGCATGCGCTTCAGAATGCTGTTTGAAACAGAGGAATCTAGTGTGCGGCGATACATGGGCACCATAACTGGTATTAGTGACTTGGATCCTGTTCGATGGCAAAATTCACATTGGCGTTCGGTCAAGGTTGGCTGGGATGAGTCTACTGCTGGAGAGAAGCAACCTCGAGTGTCTCTATGGGAAATTGAGCCCTTAACAACATTTCCTATGTATCCATCTCCGTTTCCTCTTAGGCTTAAAAGACCATGGCCTTCAGGACTTCCTTCTTTCTATGGCATGAAGGAGGATGATTTCGGCATAAATTCTTCACTAATGTGGCTTAGAGATGCTGATAGAGGGCTACAGTCTCTTAATTTTCAGGGTACCGGTGTAAGTCCTTGGATGCAGCCAAGGCTTGATCCCTCCATGTTGAATTTGCAAACAGATCTGTACCAAGCTATGGCTGCCACTGCGCTTCAGGATATGAGGACTTTAGACCCTACCAAACAGCATCCAACTTCCTTAATTCAGTTTCAGCAACCCCAGAACTTCCCTAACCGGACGGGTGCTTTAATGCAGACACCAATGTTGCAGCCCTCTCAACATCAGCAGGCCTTCCCAAATAATCAAGAAATTCAGCATCCATCTCAATCTCAGGTTCAAATTCAAAATCATCTTCAGCAGCATCTACAGAATCAGCACTTATTCAACAATCAGAGTCATCAGCAGCAGCAACCACAGCTTCAACAGCAGCAGCAGCAACAACAACAAATAGTAGATCATCAGCAGATTCCAAATGTGGTCTCTACAATGTCTCAGTTCGTTTTGACTCCGCAGTCTCAGTCGTTACCCATGCAGGCTATCTCTTCACTGTGCCATCAGCAAAGTTTTACTGATTCAAATGGTACTGCTGCTGTTTCTCCGCTACACAGTATCTTGGGTTCATTTCCCCAGGATGAAACATCCCACCTTGTCAACCTTGCTAGAACTTCCTCTTGGGTTCCTGTTCAATCTTCATCTGCATGGCCCTCAAAGCGTGTTGCAGTGGATCCTCTTGTTTCTTCTGAAGCTTCTCAATGTGTTCTGCCTCAGGTGGATCAGTTGGGGCAGGCACATAGCACCATGTCTCAGAATGCTATTTCGTTGCCACCAGTTCCTGGTAGGGAGTACAGTGTAGAAGGGAGCACTGATCCACAAAACCATATTTTGTTTGGTGTGAATATAGAAAACTCTTCTTCGCTACTAATGCATCATGGAATGTCAAGCCTTAAGGGGGTTGGCAGCAACACTCATTCATCAACCGTACCTATTCAATCTTCTAATTACCTGAATACAGTAGGCACTGATTCTTCACTGAATCAAGGAATGACACACAGCAATGGTGAATCGGGCTTCCTTCAGACTCCAGAAGATGGGGGCCGAGGAAACCCGCCAAATAAAAAGACCTTTGTGAAGGTTTATAAATCAGGGACCTTTGGAAGATCATTGGATATAACTAGATTTACCAACTACCATGAGCTGCGCAGCGAGCTTGCTCGTATGTTCGGCCTTGAAGGTGAGTTGGAGGACCCTTTGAGATCAGGCTGGCAGCTTGTAGTTGTGGACCGAGAGAATGACGTTCTTCTCCTCGGTGATGACCCATGGCCGGAATTTGTAAATAGTGTATGGTGCATCAAGATACTTTCCCCTCGGGAGGTGCAGCAAATGGCCAACAATGGCATCTGTGATGACTTACCAGGACATGATGACCCAAGAAATTTAGACTTCTGA 2631 0.4584 MKLSSADFCPPPPEGEKRVLDSELWHACAGPLVSLPIVGSRVVYFPQGHSEQVAVSTNREVDAQIPNYPSLPPQLICQLHNVTMHADIETDEVYAQMTLQPLNPQEQKEAYLPAELGTPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFTQQPPAQELIARDLHGNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDAVLFIWNEKNQLLLGIRRANRPQPVMPSSVLSSDSMHLGLLAAAAHAAATNSRFTIFYNPRACPSDFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWQNSHWRSVKVGWDESTAGEKQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPSGLPSFYGMKEDDFGINSSLMWLRDADRGLQSLNFQGTGVSPWMQPRLDPSMLNLQTDLYQAMAATALQDMRTLDPTKQHPTSLIQFQQPQNFPNRTGALMQTPMLQPSQHQQAFPNNQEIQHPSQSQVQIQNHLQQHLQNQHLFNNQSHQQQQPQLQQQQQQQQQIVDHQQIPNVVSTMSQFVLTPQSQSLPMQAISSLCHQQSFTDSNGTAAVSPLHSILGSFPQDETSHLVNLARTSSWVPVQSSSAWPSKRVAVDPLVSSEASQCVLPQVDQLGQAHSTMSQNAISLPPVPGREYSVEGSTDPQNHILFGVNIENSSSLLMHHGMSSLKGVGSNTHSSTVPIQSSNYLNTVGTDSSLNQGMTHSNGESGFLQTPEDGGRGNPPNKKTFVKVYKSGTFGRSLDITRFTNYHELRSELARMFGLEGELEDPLRSGWQLVVVDRENDVLLLGDDPWPEFVNSVWCIKILSPREVQQMANNGICDDLPGHDDPRNLDF* 877
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g5570 876 MobiDBLite consensus disorder prediction 743 766 - -
Amo13g5570 876 MobiDBLite consensus disorder prediction 485 510 - -
Amo13g5570 876 SMART B3_2 127 229 IPR003340 GO:0003677
Amo13g5570 876 Gene3D - 765 857 - -
Amo13g5570 876 Pfam B3 DNA binding domain 127 228 IPR003340 GO:0003677
Amo13g5570 876 SUPERFAMILY DNA-binding pseudobarrel domain 112 256 IPR015300 -
Amo13g5570 876 PANTHER AUXIN RESPONSE FACTOR 1 861 - -
Amo13g5570 876 MobiDBLite consensus disorder prediction 525 544 - -
Amo13g5570 876 Pfam AUX/IAA family 765 857 IPR033389 -
Amo13g5570 876 ProSiteProfiles PB1 domain profile. 768 852 IPR000270 GO:0005515
Amo13g5570 876 SUPERFAMILY CAD & PB1 domains 764 843 - -
Amo13g5570 876 Gene3D - 291 363 - -
Amo13g5570 876 CDD B3_DNA 126 227 IPR003340 GO:0003677
Amo13g5570 876 Pfam Auxin response factor 253 336 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Amo13g5570 876 Gene3D - 125 228 IPR015300 -
Amo13g5570 876 ProSiteProfiles B3 DNA-binding domain profile. 127 229 IPR003340 GO:0003677
Amo13g5570 876 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 861 IPR044835 GO:0003677|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g5570 Amo-Chr13 157386095 157391958 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g5570 1 483 B3 DNA Binding Superfamily AT1G30330 84.426 0.0 827
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Amo13g5570 AUX_IAA 1.4e-06 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g5570 - - gmx:100777789 1418.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g5570 13 157386095 157391958 Amo13g5570 13 157386095 157391958 ECH
Amo20g1111 20 20671204 20677126 Amo13g5570 13 157386095 157391958 PCT
Amo10g0677 10 8631775 8637640 Amo13g5570 13 157386095 157391958 PCT