Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g5560 ATGGATAATAATGGTTGCTTGCCATGTACACGTCGTGAAGGTTTTCCGGCTGGACTGAGAGTTCTGGTTGTTGATGATGATCCAACATGGCTCAAGATCCTTGAAAAGATGCTCAAGAAGTGCTCTTACCAAGTGACTACATGTTGTTTGGCAACGGAGGCTCTGAAGAAGCTTCGAGAGAGGAAAGATGCATTCGACATAGTGATCAGCGATGTAAACATGCCTGACATGAATGGATTCAAGCTTCTTGAGCATGTTGGACTTGAGATGGATCTGCCTGTCATTAGTATGTTATCATTCAAGTTTTTAACTTCATATGATATATATTATTATAACAAAACTAAAGTTGATAGTTTAAATTGTGCAGTGATGTCTGTTGATGGAGAAACAAGCAGGGTAATGAAAGGTGTTCAACATGGAGCATGTGATTATCTCCTCAAGCCTATAAGGATGAAAGAACTGCGAAACATATGGCAGCATGTCTTGAGAAAAAGGATTCATGAAGGGAGAGAGTTTGAAAGCCTAGAGGGCTTTGATTTTGAGGGCATTCATCACTTGATGAGAAATGGACAAGATCAATGTTGTGATGATGTGAGCCTCTTTGCATTAGAAGATTGTATCAGTTCAACAAGGAAAAGGAAAGATGCAGATAATAAACACGACGAAAGAGAATTCGGAGATTCTTCTTCAACCAAGAAAGCTAGAGTGGTTTGGTCTGTGGATCTTCATCAGAAGTTTGTCCAAGCAGTGAATCAGATTGGATTTGATAAAGTTGGTCCCAAGAAAATTCTAGATTTGATGAATGTACCATGGCTTACCAGAGAAAATGTTGCTAGTCATTTGCAGAAATACAGGCTCTACTTGAGTAGGTTGCAGAAGCAGAGAGATCAGAAGAAATGCTCTTCAAGTGGAATAAAGAATCCGGATTTGAATCCGAAAGATCCTGGAAGCTCTAGTATTAAGAACTCTATGAACAAGCAACAAAATGTAGTTTCAATTGACGGCTTCAGATGTCCAAATAATGGATTAGTGCAACTTCATGAATCCGATTTCACTGTGTCAGAGCTTAATAAAACAGAACAAAGAAGAGCACTAGCTACTAATAACATTATTCCTGATCCAAACATGACAAAGGTTTCACAGATAGTCCTTAATCAAACCTTTTCACCTCTCAATTCAGAAGGAAACATTGAAGTATTTGATTGCACCATACCAACACAGTACACTTGGAATCAAGTTCCCAAAAGGAAACTCCAAGATGATCCTAAATCACAATCAATTGCTTCAATGGTATCCAGTCCCTCTGCTGCAAGCTCAATAGCTTCTTCTGCAGTTGACAACATTATTCCGGTTCAGTCCAAAAGCCTTATGGTGAATGATCAATCTTCAGTCACTTCAAATCCGGGCTTGAAAACACAGGAATTTGATGCCAGTCTCATTCCTGATCTGGAATTTTACCAGCAAAACCTACTCTGGGGTGGCGAGGCGGCTTTTTCGCCTTTGGAGGAGGACTTGAATTTCTTTTTGCTACAAAGTGAATGCTACAATGACATGAACTTTGGTATGCACAACATAGACACGTCAGACTATTATTACGATCCAGGGCTTATTGCTGATGTTCCAAACCATTTATTATACGATTCAGCAGATTATTCAGTAGTAGATCAAAGTCTATTCATAGCATGA 1686 0.3921 MDNNGCLPCTRREGFPAGLRVLVVDDDPTWLKILEKMLKKCSYQVTTCCLATEALKKLRERKDAFDIVISDVNMPDMNGFKLLEHVGLEMDLPVISMLSFKFLTSYDIYYYNKTKVDSLNCAVMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVLRKRIHEGREFESLEGFDFEGIHHLMRNGQDQCCDDVSLFALEDCISSTRKRKDADNKHDEREFGDSSSTKKARVVWSVDLHQKFVQAVNQIGFDKVGPKKILDLMNVPWLTRENVASHLQKYRLYLSRLQKQRDQKKCSSSGIKNPDLNPKDPGSSSIKNSMNKQQNVVSIDGFRCPNNGLVQLHESDFTVSELNKTEQRRALATNNIIPDPNMTKVSQIVLNQTFSPLNSEGNIEVFDCTIPTQYTWNQVPKRKLQDDPKSQSIASMVSSPSAASSIASSAVDNIIPVQSKSLMVNDQSSVTSNPGLKTQEFDASLIPDLEFYQQNLLWGGEAAFSPLEEDLNFFLLQSECYNDMNFGMHNIDTSDYYYDPGLIADVPNHLLYDSADYSVVDQSLFIA* 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g5560 561 PIRSF RR_ARR_type-B 2 106 IPR017053 GO:0003677|GO:0003700|GO:0009736
Amo13g5560 561 PIRSF RR_ARR_type-B 119 525 IPR017053 GO:0003677|GO:0003700|GO:0009736
Amo13g5560 561 PANTHER TWO-COMPONENT RESPONSE REGULATOR 120 423 - -
Amo13g5560 561 Gene3D - 229 296 - -
Amo13g5560 561 PANTHER TWO-COMPONENT RESPONSE REGULATOR 8 97 IPR045279 GO:0009736
Amo13g5560 561 Gene3D - 19 194 - -
Amo13g5560 561 PANTHER TWO-COMPONENT RESPONSE REGULATOR 437 534 IPR045279 GO:0009736
Amo13g5560 561 SUPERFAMILY Homeodomain-like 231 290 IPR009057 -
Amo13g5560 561 ProSiteProfiles Response regulatory domain profile. 20 162 IPR001789 GO:0000160
Amo13g5560 561 SMART REC_2 19 158 IPR001789 GO:0000160
Amo13g5560 561 SUPERFAMILY CheY-like 18 170 IPR011006 -
Amo13g5560 561 MobiDBLite consensus disorder prediction 297 324 - -
Amo13g5560 561 CDD REC_typeB_ARR-like 21 162 - -
Amo13g5560 561 PANTHER TWO-COMPONENT RESPONSE REGULATOR 8 97 - -
Amo13g5560 561 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 233 286 IPR006447 GO:0003677
Amo13g5560 561 MobiDBLite consensus disorder prediction 303 324 - -
Amo13g5560 561 PANTHER TWO-COMPONENT RESPONSE REGULATOR 120 423 IPR045279 GO:0009736
Amo13g5560 561 PANTHER TWO-COMPONENT RESPONSE REGULATOR 437 534 - -
Amo13g5560 561 Pfam Response regulator receiver domain 21 96 IPR001789 GO:0000160
Amo13g5560 561 Pfam Myb-like DNA-binding domain 235 285 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g5560 Amo-Chr13 157207209 157210341 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g5560 15 298 Response Regulator Gene Family AT2G25180 49.141 4.63e-76 250
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Amo13g5560 Response_reg 1.1e-14 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g5560 - K14491 gmx:100806394 627.091