Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g5553 ATGTACTTGTCGGAAAAACCCCGACCCATAGATTTCTATAAGGAAGAAAGCAGCACGCGTGACATGATCATCGAGGTCGTCTCCAACGGCGCGGCGGACCTACCTCCTCCGCCGTCCCACCAGCAGCAGCAGATGATCCTGGGTGACAGCAGCGGCGGCGAAGACCCTGAGGTTGAGATCAAGGCGCCAAAGAAGCGCGCGGAGACGTGGGTCCACGAAGAGACTCGAACCCTGATCGCGCTCCGGCGAGAAATGGACGCCCTTTTCAACACTTCTAAGTCCAACAAGCACTTGTGGGAGCAGATTTCTTCGAAGATGAGGGATAAGGGTTTCGATCGCTCGCCGACCATGTGCACCGACAAGTGGAGGAACCTCTTGAAGGAGTTCAAGAAGGCCAAGCACAATGATGGCGCAGCAGGAGGTGGCGGCGGCGGAGGGAGTGGCTCCGCGAAGATGTCGTATTACAAGGAGATTGAGGAGATTTTGAGGGATAGGAGCAAGTGCGTGCAGTATAAGAGCCCCACTCCTCCACCGCCTCCACCATCTAATCACAAAGTTGAATCTTTCATGCAATTCACTGATAAAGGTGGATTTTATGAAAGTAGTGCTAAATGTTATTGCAGTGGAAATGTGGACATTCACATTCACATAGTTGATACATCGCAACAAGTTGCCTTGCAATTCACATTCACATCTTGGGTGATATACTATGTACCCGTGCATGATGAACCTTGGTCCATTCTTAGGTTGAATATACGAGGTATTGAGGATACCAGCATCTCTTTTGGTCCAGTTGAAGCTACTGGAAGACCAACACTCAATCTTGAGAGACGTTTGGATCATGATGGGCATCCCCTTGCCATTACAACAGCTGAGGCTGTCGCAGCTAGTGGCGTTCCTCCCTGGAATTGGAGAGAAACTCCTGGAAATGGTGAAGAGGGCCAGTCATGTTGTGGAAGGGTTATATCTGTCAAATGGGGTGATTATACGAGAAGAATAGGTATTGACGGTGCTTCAGAAGCCATCAAGGAGGCCATAAGAGCTGCTTTCCGACTGAGAACTAAACGTGCATTTTGGTTGGAGGATGAGGACCAGATAATCAGAAGTCTTGACCGCGACATGCCTTTAGGAAATTATACTCTTCACCTTGATGAAGGAATGGCCATTAAAGTGTGTCTGTATGACGAGTCTGACCATATCCCTGTGCATACTGAAGAGAAGATCTTCTATACAGAAGACGATTATCGTGATTTTTTGACTCGCCGGGGTTGGACATCTCTAAGAGAATTTGACGGCTATAGGAATATTGATAACATGGATGATCTTCGACCCGGTGCCATATACAGGGGTGTGACTTGA 1359 0.4864 MYLSEKPRPIDFYKEESSTRDMIIEVVSNGAADLPPPPSHQQQQMILGDSSGGEDPEVEIKAPKKRAETWVHEETRTLIALRREMDALFNTSKSNKHLWEQISSKMRDKGFDRSPTMCTDKWRNLLKEFKKAKHNDGAAGGGGGGGSGSAKMSYYKEIEEILRDRSKCVQYKSPTPPPPPPSNHKVESFMQFTDKGGFYESSAKCYCSGNVDIHIHIVDTSQQVALQFTFTSWVIYYVPVHDEPWSILRLNIRGIEDTSISFGPVEATGRPTLNLERRLDHDGHPLAITTAEAVAASGVPPWNWRETPGNGEEGQSCCGRVISVKWGDYTRRIGIDGASEAIKEAIRAAFRLRTKRAFWLEDEDQIIRSLDRDMPLGNYTLHLDEGMAIKVCLYDESDHIPVHTEEKIFYTEDDYRDFLTRRGWTSLREFDGYRNIDNMDDLRPGAIYRGVT* 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g5553 452 CDD GT1 68 133 - -
Amo13g5553 452 PANTHER TRIHELIX TRANSCRIPTION FACTOR GT-4 249 451 - -
Amo13g5553 452 Pfam Myb/SANT-like DNA-binding domain 69 161 IPR044822 -
Amo13g5553 452 MobiDBLite consensus disorder prediction 35 49 - -
Amo13g5553 452 PANTHER - 249 451 - -
Amo13g5553 452 PANTHER TRIHELIX TRANSCRIPTION FACTOR GT-4 5 201 - -
Amo13g5553 452 SMART sant 66 128 IPR001005 -
Amo13g5553 452 Gene3D - 70 132 - -
Amo13g5553 452 MobiDBLite consensus disorder prediction 30 66 - -
Amo13g5553 452 PANTHER - 5 201 - -
Amo13g5553 452 ProSiteProfiles Myb-like domain profile. 62 126 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g5553 Amo-Chr13 157071562 157074604 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g5553 22 451 Trihelix Transcription Factor Family AT3G25990 58.933 1.36e-170 482
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Amo13g5553 Myb_DNA-bind_4 3.3e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g5553 - - tcc:18609686 568.155