Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g5551 ATGTACTTGTCGGAAAAACCCCGACCCATAGATTTCTATAAGGAAGAAAGCAGCACGCGTGACATGATCATCGAGGTCGTCTCCAACGGCGCGGCGGACCTACCTCCTCCGCCGTCCCACCAGCAGCAGCAGATGATCCTGGGTGACAGCAGCGGCGGCGAAGACCCTGAGGTTGAGATCAAGGCGCCAAAGAAGCGCGCGGAGACGTGGGTCCACGAAGAGACTCGAACCCTGATCGCGCTCCGGCGAGAAATGGACGCCCTTTTCAACACTTCTAAGTCCAACAAGCACTTGTGGGAGCAGATTTCTTCGAAGATGAGGGATAAGGGTTTCGATCGCTCGCCGACCATGTGCACCGACAAGTGGAGGAACCTCTTGAAGGAGTTCAAGAAGGCCAAGCACAATGATGGCGCAGCAGGAGGTGGCGGCGGCGGAGGGAGTGGCTCCGCGAAGATGTCGTATTACAAGGAGATTGAGGAGATTTTGAGGGATAGGAGCAAGTGCGTGCAGTATAAGAGCCCCACTCCTCCACCGCCTCCACCATCTAATCACAAAGTTGAATCTTTCATGCAATTCACTGATAAAGGTATTGAGGATACCAGCATCTCTTTTGGTCCAGTTGAAGCTACTGGAAGACCAACACTCAATCTTGAGAGACGTTTGGATCATGATGGGCATCCCCTTGCCATTACAACAGCTGAGGCTGTCGCAGCTAGTGGCGTTCCTCCCTGGAATTGGAGAGAAACTCCTGGAAATGGTGAAGAGGGCCAGTCATGTTGTGGAAGGGTTATATCTGTCAAATGGGGTGATTATACGAGAAGAATAGGTATTGACGGTGCTTCAGAAGCCATCAAGGAGGCCATAAGAGCTGCTTTCCGACTGAGAACTAAACGTGCATTTTGGTTGGAGGATGAGGACCAGATAATCAGAAGTCTTGACCGCGACATGCCTTTAGGAAATTATACTCTTCACCTTGATGAAGGAATGGCCATTAAAGTGTGTCTGTATGACGAGTCTGACCATATCCCTGTGCATACTGAAGAGAAGATCTTCTATACAGAAGACGATTATCGTGATTTTTTGACTCGCCGGGGTTGGACATCTCTAAGAGAATTTGACGGCTATAGGAATATTGATAACATGGATGATCTTCGACCCGGTGCCATATACAGGGGTGTGACTTGA 1185 0.5013 MYLSEKPRPIDFYKEESSTRDMIIEVVSNGAADLPPPPSHQQQQMILGDSSGGEDPEVEIKAPKKRAETWVHEETRTLIALRREMDALFNTSKSNKHLWEQISSKMRDKGFDRSPTMCTDKWRNLLKEFKKAKHNDGAAGGGGGGGSGSAKMSYYKEIEEILRDRSKCVQYKSPTPPPPPPSNHKVESFMQFTDKGIEDTSISFGPVEATGRPTLNLERRLDHDGHPLAITTAEAVAASGVPPWNWRETPGNGEEGQSCCGRVISVKWGDYTRRIGIDGASEAIKEAIRAAFRLRTKRAFWLEDEDQIIRSLDRDMPLGNYTLHLDEGMAIKVCLYDESDHIPVHTEEKIFYTEDDYRDFLTRRGWTSLREFDGYRNIDNMDDLRPGAIYRGVT* 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g5551 394 CDD GT1 68 133 - -
Amo13g5551 394 Pfam Myb/SANT-like DNA-binding domain 69 161 IPR044822 -
Amo13g5551 394 MobiDBLite consensus disorder prediction 35 49 - -
Amo13g5551 394 PANTHER TRIHELIX TRANSCRIPTION FACTOR GT-4 5 393 - -
Amo13g5551 394 SMART sant 66 128 IPR001005 -
Amo13g5551 394 Gene3D - 70 132 - -
Amo13g5551 394 SUPERFAMILY Homeodomain-like 66 127 IPR009057 -
Amo13g5551 394 MobiDBLite consensus disorder prediction 30 66 - -
Amo13g5551 394 ProSiteProfiles Myb-like domain profile. 62 126 IPR001005 -
Amo13g5551 394 PANTHER - 5 393 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g5551 Amo-Chr13 157048912 157052681 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g5551 22 393 Trihelix Transcription Factor Family AT3G25990 70.241 0.0 525
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Amo13g5551 Myb_DNA-bind_4 2.6e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g5551 - - aip:107632016 776.933
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g5551 13 157048912 157052681 Amo13g5551 13 157048912 157052681 ECH