Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g5544 ATGGTAGAACTACCGCGTAGGGCAACGACAATCACTCAGAGAGCTGAGTCATTCAGCCCATCCCGCAGCCGCTCCCCGCCTCGGCGCCTCCCCTGCATTCTTCTTCTTCGTGCTCCAGCCGCCACCATCCACTCACAGGAGACCCTGGTTGTGTTGCAACCCTGCTATTTAACTTCTTACGATTGTGCTCCGACCCTACCAACAAAGATGGACTCCGATTCAGACTCTGACGGATCCCATGTCTCTGCAACTCCTCCACGACGAGCAACTCCATCACCGCCGCCACAACCACCTCGTGTTCCTTCCGGAAAATCTAGAATCAGAACCAAAACCTCGAGCTCCAAGAAGCGCCCTTCTGCACCCGATAAAATCCAATCCAAACACGATCCGCTACCCGAACCAAGCCACCAACTCCAAGACCCTTTCTCCCTCCCGACCGCTCTACCGTTTCAAATTCGTCGGTCCTCCGAGTGTGACCCCACACCCCCTTCCACTTCCCAGCCCCTCGAAACCCTCCCGGCGGGGTTCTTCTCCAAATCCGCTTCCTTCTCGAAGATCCGAAGACATTCTATAAGTTTTGAAGCTTCTGGAAACGAACCGCTACTCGATTCTACGTCCAATCTGGGCACCAATGTTGGACTTGATTATGCTCGTGCTTTCCCCAAAGGAGAAAAGGGGAAATGTGGAAGGAGAGAAGAAGAAGGACTCGGGTTTGGTTCCAGAGATAAGAGGAAATTTGGAAAGATAGAAGAAGAGGAAGAAAGAGGAGGACTTGGAGCTGTTTCTAGAGAAAAGGAGAGCTTTGGAAAGAGAGGAGAAGCAGAAGAAGGATTTGGAGTTGGAGTTGGTTCTAGAGTAAAGGGGACATCCGGGAAGAGGCAGCATCCTAACCTGATAGGGGCAAATGCACCATTGCCAGCCGTGAAGCTGCGAAAATGTGGCGGGGAAGGGAACTTTGTGAAATTGAACTTGAGTGGTGGTGGTAAGAGGAGGAAGTTTATGAACAAGGGGTACAAGAAAAGTGGGAGATTTTCTGGTGGTAGAAGGTACACAAGAAGAAGTAGAGGTAAAGTGGGACGTCAAGGGAAGGAGGATCAAGAGGAACTTGGTTTTGATGATGAAGAAGGGTTGGTTACAGAGAGTGGGCAAAAGAAGCAAAAGCAGACTTGCAGAGCTAGTGAGGTTCAGTTGAAATTGGTGGACGAGGCAGTGTCTGCTGCTCAAGCTGAGCCTTCGGATGAGAATTTGGTGAACTTGCTGAGCTTGGTTTATGGCTATGATAGTTTTCGAGATGGGCAGCTGGAGGCAATCAAGATGGTTCTTACCGGGAAGTCTACCATGCTTATTTTGCCAACTGGTGCAGGGAAGTCACTCTGCTATCAGCTGCCTGCCTTGATTTTGCCTGGGATTACCCTAGTTGTCAGTCCACTGGTGGCCTTGATGATTGATCAGCTAAGGCAACTGCCCCCTGTGATTAGGGGTGGTTGTTTAAGCAGCAGTCAGACATCTGAGGAAGCAGCTGAAACACTCAACCAGCTTAGACAAGGTGCAGTGAAGGTGCTTTTTGTTTCCCCAGAGCGCTTCCTGAATGAGGAGTTTCTGTCTGTTATTTCTGGTATGTCAGGCATCTCACTTCTTGTTGTTGATGAAGCACACTGTATTTCTGAATGGTCTCACAATTTCCGACCATCATTCATGAGACTTAGAGCATCTTTGCTCCGTAAAAGGCTTAACGTAGGTACTATTCTTGCAATGACAGCAACTGCTACAAACACAACTTTAGATGCCATCATGTCTGCTCTAGATATTCCTTGCACAAATATTATTCAAAAGACACAACTAAGGGACAATTTTCATTTATCGGTGTCTTTGCTGAAAAATAGAATGAAAGACCTTCTGGTTCTCATGAAGTCTTCTCCTTTTGCTGAAGTTCAAAGCATTATCATATACTGCAAATTTCAGTCTGAAACTGATTTGATTAGCCGATACTTGAATGATAACAATATCTCGGCAAAGAGTTATCATGGTGGTATGAGTTCAAAGGAACGCAACTATGTCCAAGAGTTGTTTACCTCCAACAAGATCAGAGTGGTTGTTGCAACTGTGGCATTTGGTATGGGACTGGATAAAAGTGATGTTGGAGCTGTAATTCATTATAGTCTGCCTAAAAGTCTGGAGGAGTATGTGCAGGAGATAGGCCGTGCTGGAAGGGATGGGAGGTTGTCCTATTGTCACCTATTCTATGATGATGAAACATATTTCAAACTTCGCAGTCTAATGTACAGTGAAGGAGTAGATGAATACACAGTGAACAAATTTCTGCATGAAGTGTTTCCTGCTGAGAAGAGCTCCTGTGGGAGAATATGTTCGTTAATTAAAGAATCTTCTTCACGCAAGTTTGATATGAAAGAAGAGGTGATGCTAACAATTTTGACACGCTTGGAGTTGGGAGATGTGAAGTACTTGTATTTACTTCCACAGATAAATGCAACTTGCAATTTGACATTTCATAAGACTCCCCCACCTATGCTTGCCCAAAGGAATTATGCTGTTGCTGTTATTCTGAAGAGATCTGAATATAAGCAAGGGCTGTATGTTTTTGACATTCCATCCGTGGCAAATGACGTGGGGGTTACAGCAGTTGAGTTAACAAATCAGTTGTACAATCTCAAGTTAACGGGAGAAATAACTTATGAAATGAAGGATTTGGCCTACTGTTATAAGATTATTCAAGTCCCGACGGACTTTTTCTCGCTATCAACAGCTGTTACCCAATGGTTATCAGATGTTGAAAGTTGTAAGGTACAAAAGATAGATGTAATGCTTAATGCTGCAAATTTTGCCATAAATTTATGTGACAAGATGCATGGTTGCAGTGATAACAATCACACACCATGCTTGCAAACGAAAATATTGGATTACTTTGCTGGAGTTGATGATAACAATGATTCCTGCAAGAAAATTGGTCAAAGCAGCCCTTTCCTGCGGGCTGATATTAAGGTCTTTCTTCAGAGCAATTCACAAGCAAAATTTACACCAAGAGCTGTGGCCAGGATAATGCACGGAATTGCAAGCCCGGCATATCCTTCTACCATTTGGTGTAGAACCCATTTTTGGGGAAGGTATACACATATAGACTTCAAGGTGGTGATGGAAGCAGCAAAGGCAGAACTGAAGAATTTGGTTGGAAAAGATACGCTCTAG 3204 0.4491 MVELPRRATTITQRAESFSPSRSRSPPRRLPCILLLRAPAATIHSQETLVVLQPCYLTSYDCAPTLPTKMDSDSDSDGSHVSATPPRRATPSPPPQPPRVPSGKSRIRTKTSSSKKRPSAPDKIQSKHDPLPEPSHQLQDPFSLPTALPFQIRRSSECDPTPPSTSQPLETLPAGFFSKSASFSKIRRHSISFEASGNEPLLDSTSNLGTNVGLDYARAFPKGEKGKCGRREEEGLGFGSRDKRKFGKIEEEEERGGLGAVSREKESFGKRGEAEEGFGVGVGSRVKGTSGKRQHPNLIGANAPLPAVKLRKCGGEGNFVKLNLSGGGKRRKFMNKGYKKSGRFSGGRRYTRRSRGKVGRQGKEDQEELGFDDEEGLVTESGQKKQKQTCRASEVQLKLVDEAVSAAQAEPSDENLVNLLSLVYGYDSFRDGQLEAIKMVLTGKSTMLILPTGAGKSLCYQLPALILPGITLVVSPLVALMIDQLRQLPPVIRGGCLSSSQTSEEAAETLNQLRQGAVKVLFVSPERFLNEEFLSVISGMSGISLLVVDEAHCISEWSHNFRPSFMRLRASLLRKRLNVGTILAMTATATNTTLDAIMSALDIPCTNIIQKTQLRDNFHLSVSLLKNRMKDLLVLMKSSPFAEVQSIIIYCKFQSETDLISRYLNDNNISAKSYHGGMSSKERNYVQELFTSNKIRVVVATVAFGMGLDKSDVGAVIHYSLPKSLEEYVQEIGRAGRDGRLSYCHLFYDDETYFKLRSLMYSEGVDEYTVNKFLHEVFPAEKSSCGRICSLIKESSSRKFDMKEEVMLTILTRLELGDVKYLYLLPQINATCNLTFHKTPPPMLAQRNYAVAVILKRSEYKQGLYVFDIPSVANDVGVTAVELTNQLYNLKLTGEITYEMKDLAYCYKIIQVPTDFFSLSTAVTQWLSDVESCKVQKIDVMLNAANFAINLCDKMHGCSDNNHTPCLQTKILDYFAGVDDNNDSCKKIGQSSPFLRADIKVFLQSNSQAKFTPRAVARIMHGIASPAYPSTIWCRTHFWGRYTHIDFKVVMEAAKAELKNLVGKDTL* 1068
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g5544 1067 MobiDBLite consensus disorder prediction 1 28 - -
Amo13g5544 1067 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 628 785 IPR001650 -
Amo13g5544 1067 Pfam DEAD/DEAH box helicase 431 593 IPR011545 GO:0003676|GO:0005524
Amo13g5544 1067 MobiDBLite consensus disorder prediction 250 300 - -
Amo13g5544 1067 MobiDBLite consensus disorder prediction 68 142 - -
Amo13g5544 1067 MobiDBLite consensus disorder prediction 87 101 - -
Amo13g5544 1067 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 544 553 IPR002464 -
Amo13g5544 1067 Pfam Helicase conserved C-terminal domain 644 738 IPR001650 -
Amo13g5544 1067 MobiDBLite consensus disorder prediction 10 24 - -
Amo13g5544 1067 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 469 757 IPR027417 -
Amo13g5544 1067 SMART ultradead3 425 621 IPR014001 -
Amo13g5544 1067 Gene3D - 607 807 IPR027417 -
Amo13g5544 1067 MobiDBLite consensus disorder prediction 69 86 - -
Amo13g5544 1067 CDD DEXHc_RecQ4-like 417 610 - -
Amo13g5544 1067 MobiDBLite consensus disorder prediction 115 134 - -
Amo13g5544 1067 MobiDBLite consensus disorder prediction 250 273 - -
Amo13g5544 1067 PANTHER DNA HELICASE RECQ FAMILY MEMBER 105 991 - -
Amo13g5544 1067 Gene3D - 395 606 IPR027417 -
Amo13g5544 1067 SMART helicmild6 658 739 IPR001650 -
Amo13g5544 1067 TIGRFAM recQ_fam: ATP-dependent DNA helicase, RecQ family 419 788 IPR004589 GO:0004386|GO:0006310
Amo13g5544 1067 MobiDBLite consensus disorder prediction 332 356 - -
Amo13g5544 1067 CDD SF2_C_RecQ 615 748 - -
Amo13g5544 1067 PANTHER ATP-DEPENDENT DNA HELICASE Q4 105 991 - -
Amo13g5544 1067 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 437 607 IPR014001 -
Amo13g5544 1067 MobiDBLite consensus disorder prediction 331 371 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g5544 Amo-Chr13 156950095 156956922 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g5544 648 771 Eukaryotic Initiation Factors Gene Family AT3G19760 33.333 1.86e-15 78.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g5544 K10730 - gmx:100811214 1132.47