Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g5541 ATGGCGGCTGGTAGGCATGGCGGCTATCGTGACAACGAGTTTAGGGACCGTGAGTCGAATTTGGATGTTTCAAGGCGCGGTTTCGCGAATTCGAAGGAAGATTACGATCGGGTTAGGAATGGAGGCCGTGACGTTGTGAGGGGTGGGAGCAGGGATGCAAGAGATAGGATTAGGGTTAGGCAGAAGGATATTAGGGAGAGAGAAGCTTCCAATGGCGGTCACCGGTCATCTTCTAGTAGGAGTGATTCTGGCAGCAGCGGAGGTGGTGGTAGTGATGGTGGCGGGCTTGGGCCCCGACGGTGTGGCTTTTCTGCCAAGACCATGGATAGGGAGCCTGGTGAACTTTCCAGTGAGAGTGGGTCTGATGGTGCTATTGAACCAGAGTCAATGATGAAAGACAGCGAGGTTGCGAATGTTGAACATAATAGGACTCGATCCCCGCCCCCACCAGAGAAGAAAAGGAAGTTTTCACCGATTGTGTGGGATCAGGATGACAAGGAAGTGAGCGAGCCATCTAAAACCAAATCTAAGGTTTCCACTGCTCCAGTGACTGCTCTTCCACCTCCGCCTCCACTGCCAAAATCATTTGTGCGGTCACCTAATGTTCCATATGGTGGAGTTGAGATACATCCTGTCAAAAAGAGTGAAACTAAGGATGTTGAATTACCGGAAGCTACTAGGGCCACTATGCCTTCTCCAGGATCGCATTCCATTTCTCCAAAACAGGCTTGGCATAATGATCGTGAAGCTGAGCAACAAGAAGGTGAGGATTATGTTCCTAGTCATAATATATCATCTTCGAGATGGGCAGCTGTAGATAACTCTCCCGGTGATGAGGGTGAAATCATCGATGATGAAGAATTGCCTAGGAGGAAGAGGAGGCTGTCTCCTGAGTTATTGGATACAAAACTACGGAACAAACTATTAAGCCCAGTGGAATCTAAAAAAGAAGGATTTGATGGTGGCAGAGCTAAATCATCTGAATCAGATGAACGAGGTAGCCATGGGAGAACGTCCAGTGGGGATGATCATCCTGGAACTGCGTCTGAGAAGGATGACTACATGGAGATTGATGCTCAAGGTGGAAAAAGTGATACTAGTATTAATCATTCTGAGACGGATTCTGAGGACGAGGATGATAGGAGGGAGACTCCGGAACCTCCAGCGACACCACAAAGAATGGTCAACATGCTTCAGGGTTGTAGAAGTGTTGATGAGTTTGAGAGACTTAACAAGATAGATGAAGGAACTTACGGTGTTGTATATAGGGCCAGAGATAAGAAGACTGGAGAAATTGTAGCATTGAAGAAAGTCAAGATGGAGAAGGAAAGAGAAGGATTTCCACTGACTTCACTTAGGGAAATAAACATTCTTCTTTCTTTCCACCACCCATCCATAGTTGATGTTAAGGAAGTAGTGGTAGGGAGTAGCCTTGATAGTATTTTCATGGTTATGGAATACATGGAGCATGATCTTAAAGGTCTGATGGAAGCAATGAAGCAACCATTTAGCCAGAGTGAAGTAAAGTGCTTAATGATCCAGCTTTTAGAAGGTGTTAAGTATCTTCACGATAATTGGGTGCTTCATAGGGATTTAAAAACTTCTAACCTCCTTTTGAATAATAGAGGTGAACTAAAGATATGTGATTTTGGTTTGGCTCGACAGTATGGGAGTCCATTGAAACCATACACACATCTCGTGGTTACTCTTTGGTACAGGGCACCTGAACTTCTTCTAGGGTCAAAACAATATTCAACAGCCATTGACATGTGGTCTCTAGGTTGTATCATGGCGGAACTTTTGTCCAAAGAACCACTATTCAATGGGAAAACAGAATTTGATCAGCTTGATAAGATTTTTAAGATTCTTGGCACACCAAACGAAACAATTTGGCCTGGGTTTTCAAAATTACCTGGAGTCAAGGTCAATTTTGTTAAGCACCAGTATAACCTCCTGCGCAAAAAGTTTCCTGCCACTTCGTTCACTGGTTCCCCAGTCCTTTCTGATGCTGGATTTGATTTGTTGAACAAGCTTCTTACTTATGACCCTGAAAAGCGGATCACGGCTGAAGCTGCTCTCAATCATGAATGGTTCCATGAAGTTCCTCTTCCCAAGAGCAAAGAATTTATGCCAACCTTTCCTGCTCAACATGCTCAAGACAGGCGGATGCGGAGAGTATTAAAGAGTCCGGATCCTTTAGAGGAGCAGCGCCGTAAGGAGTTGCAGCAGGGTGAATCAGGCACAGGTGGAATTTTTGGCTAG 2262 0.4523 MAAGRHGGYRDNEFRDRESNLDVSRRGFANSKEDYDRVRNGGRDVVRGGSRDARDRIRVRQKDIREREASNGGHRSSSSRSDSGSSGGGGSDGGGLGPRRCGFSAKTMDREPGELSSESGSDGAIEPESMMKDSEVANVEHNRTRSPPPPEKKRKFSPIVWDQDDKEVSEPSKTKSKVSTAPVTALPPPPPLPKSFVRSPNVPYGGVEIHPVKKSETKDVELPEATRATMPSPGSHSISPKQAWHNDREAEQQEGEDYVPSHNISSSRWAAVDNSPGDEGEIIDDEELPRRKRRLSPELLDTKLRNKLLSPVESKKEGFDGGRAKSSESDERGSHGRTSSGDDHPGTASEKDDYMEIDAQGGKSDTSINHSETDSEDEDDRRETPEPPATPQRMVNMLQGCRSVDEFERLNKIDEGTYGVVYRARDKKTGEIVALKKVKMEKEREGFPLTSLREINILLSFHHPSIVDVKEVVVGSSLDSIFMVMEYMEHDLKGLMEAMKQPFSQSEVKCLMIQLLEGVKYLHDNWVLHRDLKTSNLLLNNRGELKICDFGLARQYGSPLKPYTHLVVTLWYRAPELLLGSKQYSTAIDMWSLGCIMAELLSKEPLFNGKTEFDQLDKIFKILGTPNETIWPGFSKLPGVKVNFVKHQYNLLRKKFPATSFTGSPVLSDAGFDLLNKLLTYDPEKRITAEAALNHEWFHEVPLPKSKEFMPTFPAQHAQDRRMRRVLKSPDPLEEQRRKELQQGESGTGGIFG* 754
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g5541 753 Pfam Protein kinase domain 407 698 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo13g5541 753 CDD STKc_CDC2L1 401 698 IPR045267 GO:0004674|GO:0005524|GO:0006468
Amo13g5541 753 MobiDBLite consensus disorder prediction 183 197 - -
Amo13g5541 753 MobiDBLite consensus disorder prediction 308 359 - -
Amo13g5541 753 MobiDBLite consensus disorder prediction 718 742 - -
Amo13g5541 753 MobiDBLite consensus disorder prediction 74 88 - -
Amo13g5541 753 MobiDBLite consensus disorder prediction 715 753 - -
Amo13g5541 753 Gene3D Transferase(Phosphotransferase) domain 1 490 731 - -
Amo13g5541 753 SUPERFAMILY Protein kinase-like (PK-like) 399 704 IPR011009 -
Amo13g5541 753 PANTHER CELL DIVISION PROTEIN KINASE 159 753 - -
Amo13g5541 753 MobiDBLite consensus disorder prediction 258 272 - -
Amo13g5541 753 MobiDBLite consensus disorder prediction 242 256 - -
Amo13g5541 753 ProSitePatterns Serine/Threonine protein kinases active-site signature. 527 539 IPR008271 GO:0004672|GO:0006468
Amo13g5541 753 MobiDBLite consensus disorder prediction 369 387 - -
Amo13g5541 753 MobiDBLite consensus disorder prediction 8 73 - -
Amo13g5541 753 MobiDBLite consensus disorder prediction 284 301 - -
Amo13g5541 753 PANTHER CYCLIN-DEPENDENT KINASE G-2-LIKE 159 753 - -
Amo13g5541 753 Gene3D Phosphorylase Kinase; domain 1 391 489 - -
Amo13g5541 753 MobiDBLite consensus disorder prediction 1 393 - -
Amo13g5541 753 MobiDBLite consensus disorder prediction 133 173 - -
Amo13g5541 753 ProSiteProfiles Protein kinase domain profile. 407 698 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo13g5541 753 SMART serkin_6 407 698 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g5541 Amo-Chr13 156913289 156921930 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g5541 398 744 Core Cell Cycle Gene Families AT5G10270 45.067 2.79e-95 303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-PITSLRE Amo13g5541 Pkinase 1.3e-75 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g5541 K08818 - gmx:100792524 1172.53