Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g5535 ATGGATGTAGCTGAGTATGAGGAAAAACAGTTTTCAGCAAGTGATGCCAAGTTACATGGACAGATGTGCAAGGCGCTTTCTCTGATATATTGCAAAATATTGTCCGTATTTCCTTCCTTGGAAGCAGCTCGGCCTAGGAGCAAATCTGGAATTCAAGCATTATGTTCTCTGCACATGGCCATAGAGAAGACTAAAAACATTCTTCAGCACTGCACAGAATGTAGTAAACTTTACCTGGCTATAACTGCAGATTCTATTCTTCTAAAATTTGAGAGGGCTAAATGTTCTCTCAAAGATGGTCTTAAACGGGTGGAAGATATTGTTCCACAATCTATTGGGTGTCAGATTCAGGAGATTGTCAATGAACTTGCAAGTGTGTCATTTGCACTTGATCCATCAGAGAAGAAAATTGGTGATGATTTAATTGCATTGCTTCAGCAGGGAAGAAAGTTTAATGACTCTAATGACAGCAATGAACTTGAATCTTTTCATCAGGCTGCTAGCAGGCTTGGAATTACATCTTCTAGAGCAGCTCTTGCTGAAAGAAGAGCTCTCAAGAAGGTCATAGAAAGGGCTCGGGCAGAGGAAGACAAGCGGAAGGAATCAATTGTTGCTTATCTTTTGCATCTTATGAAGAAATACTCAAAATTATTTAGAAATGAGTTCTCAGATGACAATGATTCTCAGGGTTCTGCACCTTGTTCTCCCACTGTTCAGGGATCCATTGAGGATGGTGTTCCCGGTGTTCATTGTCAGGCCTTTGACAGACAGTTTTCTAAACTTGGTTCCTTTTGTTTTAAGCCAAATGATATGAAATCAGAGCACATGCCCCTTCCCCCTGAAGAGCTAAGGTGCCCAATATCTTTGCAACTTATGTACGATCCTGTAATCATTGCTTCTGGGCAAACTTACGAAAGGTTATGTATAGAAAAATGGTTTAGTGATGGCCACAGCACTTGCCCAAAGACCCAACAGAAGCTCACACATCTCTGTTTGACTCCTAATTACTGTGTGAAAGGTCTTGTTGCTAGTTGGTGTGAACAGAATGGAGTTAATATTCCCGAAGGCCCTCCTGAATCTCTTGATCTTAATTACTGGAGATTGGCATTCAATGAGTCTGAATCCACAAATTCAAGATCTGCAAACAGTGTCAGCTCTTGCAAGTTGAAGGGTATTAAAGTGGTTCCATTAGAAGAAAGGGGTACCTTTGAGGAAATTGGGGGAAATAGGGCTGAAAGTGTGTCTACACAAGAGGAAGATATTGCGCAGTACTCAAGCCTTCTGGAAATCTTGACTGAGGCTAATAGTTTGAAGAGGAAATGTAAAGTGGTTGAACGATTAAGGCTGTTGCTGAAGGATGATGAAGAAGCAAGGATTTTTATGGGGGCTAATGGCTTCGTTGAAGTACTTTTGCGGTTTTTACAATCAGCTGTGCGTGAAGGAAATTTGATGGCTCAGGAGCATGGAGCAATGGCTCTTTTCAACCTGGCTGTAAATAATGACAGAAATAAGGAAATCATGTTGGCGGCAGGAGTATTATCATTGTTGGAGGAAATGGTTTCAAATACTCCTTCGTATGGTTGTGCAACTGCCTTATACGTGAATCTATCTTCCCTTGAAGAGGCCAAGCGTTTGATTGGTATGAGTCAGGCTGTTCAGTTCTTAATCGAGCTTCTTCAAGCTGACACTGATATTCAATGCAAGCAGGATTCTCTCCGTGCTCTCTATAATCTTTCCACTGTAACCTCCAACATTCCTTACCTCCTTTCATCCGGCATCGTTGGCGGCCTACAAATTCTTCTTGTGGACCAGGGCGATTGTAGTTGGATAGAAAAATGTATAGCTATTTTGATAAATTTGGCTTCTTCCCAAGATGGGATGGAGGAAATTTTATCGACTCCAGGAATTATAGGCGCATTGGCTTCAATATTGGACACAGGCGAGCTCCTAGAGCAGGAGCAAGCTGTCTCTTGCCTCCTGCTTCTATGCAATAGAAGTGAGAAATGTTGTGAGATGGTGCTACAAGAAGGTGTCATCCCTGCATTGGTTTCAATATCAGTGAATGGAAATCCAAGAGGGAGAGATAAAGCTCAGAAACTCCTGATGCTGTTTCGAGAGCAGCGGCAACGAGACCATCCGCCAGTGCAAGCTGACGCACATCATTGCCCTCCTGAAACTAACGATTTGTCAATGCCGCCTTCTGAAATGAAGCCGCAATGCAAGTCAATGTCTAGAAGTAAGACAGGGAAAGCTTTTAGCTTTTTCTGGAAAAGCAAGAGCTTTTCTGTCTACCAGTGTTAA 2301 0.4224 MDVAEYEEKQFSASDAKLHGQMCKALSLIYCKILSVFPSLEAARPRSKSGIQALCSLHMAIEKTKNILQHCTECSKLYLAITADSILLKFERAKCSLKDGLKRVEDIVPQSIGCQIQEIVNELASVSFALDPSEKKIGDDLIALLQQGRKFNDSNDSNELESFHQAASRLGITSSRAALAERRALKKVIERARAEEDKRKESIVAYLLHLMKKYSKLFRNEFSDDNDSQGSAPCSPTVQGSIEDGVPGVHCQAFDRQFSKLGSFCFKPNDMKSEHMPLPPEELRCPISLQLMYDPVIIASGQTYERLCIEKWFSDGHSTCPKTQQKLTHLCLTPNYCVKGLVASWCEQNGVNIPEGPPESLDLNYWRLAFNESESTNSRSANSVSSCKLKGIKVVPLEERGTFEEIGGNRAESVSTQEEDIAQYSSLLEILTEANSLKRKCKVVERLRLLLKDDEEARIFMGANGFVEVLLRFLQSAVREGNLMAQEHGAMALFNLAVNNDRNKEIMLAAGVLSLLEEMVSNTPSYGCATALYVNLSSLEEAKRLIGMSQAVQFLIELLQADTDIQCKQDSLRALYNLSTVTSNIPYLLSSGIVGGLQILLVDQGDCSWIEKCIAILINLASSQDGMEEILSTPGIIGALASILDTGELLEQEQAVSCLLLLCNRSEKCCEMVLQEGVIPALVSISVNGNPRGRDKAQKLLMLFREQRQRDHPPVQADAHHCPPETNDLSMPPSEMKPQCKSMSRSKTGKAFSFFWKSKSFSVYQC* 767
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g5535 766 Gene3D - 402 712 IPR011989 -
Amo13g5535 766 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 1 758 - -
Amo13g5535 766 SUPERFAMILY RING/U-box 273 354 - -
Amo13g5535 766 Pfam U-box domain 280 349 IPR003613 GO:0004842|GO:0016567
Amo13g5535 766 SMART arm_5 539 580 IPR000225 GO:0005515
Amo13g5535 766 SMART arm_5 454 498 IPR000225 GO:0005515
Amo13g5535 766 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 465 511 IPR000225 GO:0005515
Amo13g5535 766 CDD RING-Ubox_PUB 283 325 IPR045210 -
Amo13g5535 766 Coils Coil 175 195 - -
Amo13g5535 766 SUPERFAMILY ARM repeat 426 704 IPR016024 -
Amo13g5535 766 MobiDBLite consensus disorder prediction 712 742 - -
Amo13g5535 766 ProSiteProfiles U-box domain profile. 278 352 IPR003613 GO:0004842|GO:0016567
Amo13g5535 766 PANTHER U BOX DOMAIN-CONTAINING 1 758 - -
Amo13g5535 766 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 279 353 IPR013083 -
Amo13g5535 766 SMART Ubox_2 282 345 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g5535 Amo-Chr13 156885998 156889458 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g5535 1 765 U-box Gene Family AT1G24330 64.872 0.0 1009
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g5535 - - gmx:100794099 1192.95