Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g5523 ATGAATTATTGGATTTTGAAAGCTTTCCAAAGATCACTGAATTTCTCAGCTCTTCCGATGGAGTGGAATGCAAAATCTCCCTCACAATGGGAGTGGGAGCACCTGTTCTTCTCCAATGCAAAAGTAACCGAAAACCCCAAATTACAACCACCACCAGATTGGAGTGGTGAAGCAAATGGAGAAACCAATGTTGGGTTGTTGGACAATTCTGGTGGTAGTGGTTGCTCTGAGTCTGAGCTCATGAACCCATCTTCATCAAGAAGCTCGAAATCTGCTTCCATCAATTCATCTTCCAATAGGGATAGCAAAACATCTATCTTCACCTTAGAAAGTTCCCAAGATGATTCCAGTGGTAAAAAAGAAGAGCTGGTTGAAAACTCTCATTCGCATGAGGCCCCTCCTGGCTCTGGCGAACCGTTGCTTACTCTAAAGCTTGGTAAACGCTTGTATTTTGAGGATGTTTGTCCGGGAAGTGATGCCAAGAAGAACCAGTCTTCCTCGGGTGCTCCGATTCAAGCTGTGAGTAGTGGAAAGAAATCTAAGTCCAATGCTCAGAACATGCAATATCCATGCTGCCAGGTTGAAGGTTGTGGCCTTGACCTCTTGTCAGCTAAAGATTATCATCGCAAACATAGAGTTTGTGAAAATCATTCCAAATCTCCAAAGGTGGTTATTGCTGGTTTGGAACGTCGATTTTGCCAGCAATGTAGCAGGTTCCATGGTCTGTCAGAGTTTGATGAAAACAAAAGAAGCTGCAGACGGCGTCTTTCAGATCACAATGCACGGCGCCGGAAACCTCATCCTGAAACTGTCCAGTTAAATCCATCAGATTTGACTCCGTCGCCTTTTGCAGTTGGGAGGCAACAGATTAGCCCCTTCACTTATACAACGAGCGGAGCCGCGAATACAGTTTGGCAAGACATGCGGCGGAGCAAGCAGCTCCCCCAGACGAAAGATTTTCTGTTGAAGGCTGTGAAAGGCAACAATGAGATACCAAGTATTGTGAGCATGGTCACAGAGGATAATTCCAAAGGCATTGCATTTGCAAGTGTAGAGGATTCAACTACGTGCTCTGATACTCAAGATTTCCAGAGTGCTCTCTCTCTTCTGTCAACCGAGTCTCATCAGCCTCAGCGCTTGCCTATTGCTTCCTCAGAATACTGGCACACTGATCAACACCCATTGGCTTCCACCATGTGGCTCACCTACCCAACTTGCGACGACACCATCACCAACCGCTCTCAGGAATTTCAGCTCTTACGAGAACCTTATGATTCTGCTTTTAGTTATCACCACTTGGATTAA 1305 0.4567 MNYWILKAFQRSLNFSALPMEWNAKSPSQWEWEHLFFSNAKVTENPKLQPPPDWSGEANGETNVGLLDNSGGSGCSESELMNPSSSRSSKSASINSSSNRDSKTSIFTLESSQDDSSGKKEELVENSHSHEAPPGSGEPLLTLKLGKRLYFEDVCPGSDAKKNQSSSGAPIQAVSSGKKSKSNAQNMQYPCCQVEGCGLDLLSAKDYHRKHRVCENHSKSPKVVIAGLERRFCQQCSRFHGLSEFDENKRSCRRRLSDHNARRRKPHPETVQLNPSDLTPSPFAVGRQQISPFTYTTSGAANTVWQDMRRSKQLPQTKDFLLKAVKGNNEIPSIVSMVTEDNSKGIAFASVEDSTTCSDTQDFQSALSLLSTESHQPQRLPIASSEYWHTDQHPLASTMWLTYPTCDDTITNRSQEFQLLREPYDSAFSYHHLD* 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g5523 434 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 2 40 376 - -
Amo13g5523 434 SUPERFAMILY SBT domain 190 271 IPR036893 GO:0003677|GO:0005634
Amo13g5523 434 MobiDBLite consensus disorder prediction 159 182 - -
Amo13g5523 434 Pfam SBP domain 192 265 IPR004333 GO:0003677
Amo13g5523 434 MobiDBLite consensus disorder prediction 114 128 - -
Amo13g5523 434 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 40 376 IPR044817 GO:0003677
Amo13g5523 434 MobiDBLite consensus disorder prediction 158 182 - -
Amo13g5523 434 MobiDBLite consensus disorder prediction 43 140 - -
Amo13g5523 434 Gene3D - 182 253 IPR036893 GO:0003677|GO:0005634
Amo13g5523 434 ProSiteProfiles Zinc finger SBP-type profile. 189 266 IPR004333 GO:0003677
Amo13g5523 434 MobiDBLite consensus disorder prediction 62 113 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g5523 Amo-Chr13 156631791 156635134 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g5523 20 268 SBP-box Gene Family AT5G43270 49.213 1.34e-60 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Amo13g5523 SBP 3.1e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g5523 - - ahf:112792599 854.744
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g5523 13 156631791 156635134 Amo13g5523 13 156631791 156635134 ECH