Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g5517 ATGGCAACCGGTGATGATTACAATATTGATGATTTGTTTCGAGAAGCTCAAAGCAGATGGCTGAAGCCTGTGGAAGTGATGTACATTTTACAGAATCATGACAAGTACCAGTTCACACAAGAGCCCCCGCAACAGCCAACCAGTGGATCACTTTTTCTCTTTAACAGAAGAGTCCTGCGCTTCTTTCGTAGAGATGGCCATAACTGGCGCAAGAAGAAAGACGGAAGGACTGTCGGAGAGGCACACGAACGTCTTAAGGTTGGAACTGTCGAAGCCTTAAATTGTTACTATGCACATGGAGAGCAGAACCCTACTTTCCAGAGGCGGAGCTATTGGATGTTGGATCCGGCATATGAGCATATTGTTCTTGTGCATTATAGAGAAACAAGTGAGGGAAGGTCCAGCTCTGGACCTGGCACACAATTGTCACCAAGTTCCTCTTCTGCATTTGGCCAGAGTCCTAGCTCATATTCTGCTCAGACACCATTGTCAACATCTGTACTTGGTGATCCATCTGAACCTAATCAGAGTTACTCTAGTTCTGGCACCGGAGAAGTTACCTCTGATGTATTCATCATGAATGATGGAATGAGTCACCTGGATGGGACATATGCAGACTCAGGAACTTCAACTGAAGTTGAGGTTACTCGAGCTTTGTTGCGCAGATTGGAGGAGCAGTTAAGTTTGAATGAAGACAGCATCAAAGAAATTGCTTCCTTCTACAGTGAGAAAGAAATTACAGGTGATTCAAATGCTCAACAAAATCAAGGGTTGACCTGTAAGCAAGAGGAATCTGCAGCTTTTTCTAGACCAGATGATTATGGGCTAATTTTTTATGGACATAATGGAACCCAAGATGAAGGTGATAAGTCTTATGAATTAATGGACCATACATACCGTGATGGAAATGAAAAGGATATATGGACAGAGGTGCTGGAATCATGCAAGTCGTCATCCACAGCCAGGTTGCCACAGAAAAATATATACATGCCAGCTGGAGAATACTTAAAGCAGGAAAATTCACCTTCTTTGTCAAGAAAGGAACCAATTGCCAATCAGGATGACGGTCACTGGCTAAACTTCAACAACAGTAATAACGCAGAAAACTCTGTTTTCTCACTACCTGAAGGTGATAGTGGAGTCAAATATCCTCCATATTCTTCTGTGCTAGGGGCACAAAAAGCTAATTCTGAGTACTATGCAACATTGTTTGCCCAAAGCCAAATTGGACCATCTCTGGATGCAGACTCAAGCTTGACTGTCTCACAAAAGCAGAAATTTTCTATTAAGGCAGTCTCCCCAGAATGGGGTTATACCACTGAGACTACTAAGATCATCATTGTTGGGTCTTTTCTGTGTCATCCCTCAGATTCTGCCTGGGCTTGTATGTTTGGTGATGTTGAAGTTCCCATTGAGATAATTCAGGACGGTGTAATCAGTTGTGAAGCTCCATCTCGCCTTTCTGGAAAGGTTAATCTCTGCATTACTTCTGGTAATAGGCAGTCCTGCAGTGAAGTCAGAGAGTTTGAGTATCGTAATAAGACAAGTATTTGCACTTACTGTAACTCATCGGCAACAGAAGCCAACAGAAGTCCAGAAGAGCTGCTGTTACTCGTTAGATTTGCACAGATGCTGCTTTCTGGTTCAACTACAAAGAATGATGACATAGAATCTGGAACTCATCTAGTAAAACAGAAAGCCGATGATGATTCATGGAGCCATATTATAGAGGCTCTTCTAGTGGGCAGTGGAACTTCATCTGGTATGGTCGATTGGCTTCTCGAAGAGCTTCTTAAGGATAAGCTGCAGCTGTGGCTTTCTTGCAGGTCCCAGGAGAAAGATGAAGTAACAGGCTGTTGTTTGTCGAAGAAAGAGCAGGGAATCATTCACATGGTAGCTGGATTGGGTTTTGAGTGGGCCTTGCACCCTATTCTCAGTTGTGGTGTGAATATAAATTTCCGTGACATTAGCGGATGGACTGCCCTTCATTGGGCTGCACGTTTTGGAAGAGAAAAAATGGTTGCTTCACTTATAGCTTGTGGTGCATCCGCTGGAGCAGTGACAGATCCAAGTGCACAAGATCCGAAAGGCAAAACTGCTGCATCTATTGCAGCAAGCAGTGGACATAAGGGACTGGCAGGATATCTTTCTGAGAGAGCTCTGACAAGCCATCTGTCATCCCTCACGATGCAAGAGACTGAGCTATCCAAAAGTTCTGCACAACTCGAAGCAGATTTAGCTGTTTGTAGTGTCTCCAAGGAAAATCTCGCCGCCGGTGAGGATCAGGCTCCACTTAAACATACCTTGGCTGCTGTCAGAAATGCAACTCAGGCCGCAGCACGTATACAATCTGCTTTTCGTTCGCATTCCTTCAGAAAGCGGAGAGCAAGAGAAGCTGCTGCTGCCACTGCTGGTGGTATCAACGCAGGTAGCATTGGTAACATTCCGGAGCTTTCTGCTCTGTCAAAACTTGCCTTTCGGAACTCACGGGATCACAATTCTGCTGCCTTATCTATTCAGAAGAAATTTCGAGGTTGGAAGGGTCGCAAAGATTTCTTAGAATTGCGCCAAAAAGTAGTGAAGATACAGGCTCATGTGAGGGGTTACCAGGTTAGAAAGCATTACAAGGTGATATGGGCAGTTGGAATCTTGGACAAGGTTGTCCTGCGATGGCGGAGAAAAGGAGCTGGCCTACGAGGTTTCCGACAGGAGATGGAGACCAGTGCCTTGGATGAAAGTGAAGATGAAGATATTCTCAAGCCTTTTCGCAAACAGATGGTAGATGCAGAAATAAAAGAGGCCGTGTCGAGGGTGCTTTCCATGGTTGATTCTCCAGATGCTCGTCAGCAATATCATCGCATGCTTGAGAAGTATCGTCAAGCTAAGGCTGAACTTGCGGGTACGAGTGAGGAAGCATCATTGTCAACGTCCATTGCGGATGTTTTCAGTATGGAAGATGATATGTATCAGTTTCCTCAGGGCTAA 2985 0.4469 MATGDDYNIDDLFREAQSRWLKPVEVMYILQNHDKYQFTQEPPQQPTSGSLFLFNRRVLRFFRRDGHNWRKKKDGRTVGEAHERLKVGTVEALNCYYAHGEQNPTFQRRSYWMLDPAYEHIVLVHYRETSEGRSSSGPGTQLSPSSSSAFGQSPSSYSAQTPLSTSVLGDPSEPNQSYSSSGTGEVTSDVFIMNDGMSHLDGTYADSGTSTEVEVTRALLRRLEEQLSLNEDSIKEIASFYSEKEITGDSNAQQNQGLTCKQEESAAFSRPDDYGLIFYGHNGTQDEGDKSYELMDHTYRDGNEKDIWTEVLESCKSSSTARLPQKNIYMPAGEYLKQENSPSLSRKEPIANQDDGHWLNFNNSNNAENSVFSLPEGDSGVKYPPYSSVLGAQKANSEYYATLFAQSQIGPSLDADSSLTVSQKQKFSIKAVSPEWGYTTETTKIIIVGSFLCHPSDSAWACMFGDVEVPIEIIQDGVISCEAPSRLSGKVNLCITSGNRQSCSEVREFEYRNKTSICTYCNSSATEANRSPEELLLLVRFAQMLLSGSTTKNDDIESGTHLVKQKADDDSWSHIIEALLVGSGTSSGMVDWLLEELLKDKLQLWLSCRSQEKDEVTGCCLSKKEQGIIHMVAGLGFEWALHPILSCGVNINFRDISGWTALHWAARFGREKMVASLIACGASAGAVTDPSAQDPKGKTAASIAASSGHKGLAGYLSERALTSHLSSLTMQETELSKSSAQLEADLAVCSVSKENLAAGEDQAPLKHTLAAVRNATQAAARIQSAFRSHSFRKRRAREAAAATAGGINAGSIGNIPELSALSKLAFRNSRDHNSAALSIQKKFRGWKGRKDFLELRQKVVKIQAHVRGYQVRKHYKVIWAVGILDKVVLRWRRKGAGLRGFRQEMETSALDESEDEDILKPFRKQMVDAEIKEAVSRVLSMVDSPDARQQYHRMLEKYRQAKAELAGTSEEASLSTSIADVFSMEDDMYQFPQG* 995
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g5517 994 ProSiteProfiles IQ motif profile. 855 880 IPR000048 GO:0005515
Amo13g5517 994 ProSiteProfiles IQ motif profile. 832 861 IPR000048 GO:0005515
Amo13g5517 994 SMART ANK_2a 657 686 IPR002110 GO:0005515
Amo13g5517 994 SMART ANK_2a 696 725 IPR002110 GO:0005515
Amo13g5517 994 Gene3D - 832 880 - -
Amo13g5517 994 CDD IPT 428 512 - -
Amo13g5517 994 Gene3D Immunoglobulins 421 516 IPR013783 -
Amo13g5517 994 ProSiteProfiles CG-1 DNA-binding domain profile. 9 135 IPR005559 GO:0003677
Amo13g5517 994 Coils Coil 951 971 - -
Amo13g5517 994 SUPERFAMILY E set domains 429 512 IPR014756 -
Amo13g5517 994 Pfam IPT/TIG domain 429 511 IPR002909 -
Amo13g5517 994 SMART iq_5 774 796 IPR000048 GO:0005515
Amo13g5517 994 SMART iq_5 854 876 IPR000048 GO:0005515
Amo13g5517 994 SMART iq_5 831 853 IPR000048 GO:0005515
Amo13g5517 994 Pfam IQ calmodulin-binding motif 834 852 IPR000048 GO:0005515
Amo13g5517 994 Pfam IQ calmodulin-binding motif 857 876 IPR000048 GO:0005515
Amo13g5517 994 ProSiteProfiles Ankyrin repeat profile. 657 689 IPR002110 GO:0005515
Amo13g5517 994 MobiDBLite consensus disorder prediction 129 186 - -
Amo13g5517 994 SUPERFAMILY Ankyrin repeat 625 719 IPR036770 -
Amo13g5517 994 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 823 878 IPR027417 -
Amo13g5517 994 Pfam CG-1 domain 15 128 IPR005559 GO:0003677
Amo13g5517 994 ProSiteProfiles IQ motif profile. 775 804 IPR000048 GO:0005515
Amo13g5517 994 Pfam Ankyrin repeats (3 copies) 642 718 IPR002110 GO:0005515
Amo13g5517 994 Gene3D - 543 729 IPR036770 -
Amo13g5517 994 PANTHER CALMODULIN-BINDING PROTEIN 1 991 - -
Amo13g5517 994 SMART CG_1_2 12 130 IPR005559 GO:0003677
Amo13g5517 994 ProSiteProfiles Ankyrin repeat region circular profile. 657 683 - -
Amo13g5517 994 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 1 991 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g5517 Amo-Chr13 156566848 156572440 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g5517 7 992 CAMTA Transcription Factor Family AT1G67310 50.339 0.0 907
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Amo13g5517 CG-1 5.8e-49 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g5517 K21596 - gmx:100786880 1449.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g5517 13 156566848 156572440 Amo13g5517 13 156566848 156572440 ECH