Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g5491 ATGGAGGAGGAGGATGAGATCCAACCACAGGCGTGTAAGTTCCCCAGGCTCGCTAATGGCAGGACCGACCCCACCAACAACGCCAAGATAGGAGCAGCCTGGCACCATTCCTCCAGGATCATAAGGGTTTCTAGAGCTTCCGGCGGCAAAGATCGCCATAGCAAGGTAATGACCTCTAAGGGCCTGAGAGACAGAAGGGTCAGGCTCTCCGTCACCACCGCCATTCAGTTTTACGACCTCCAAGACCGATTGGGCTATGACCAGCCCAGCAAGGCCGTGGAGTGGCTCATCAAGTCTGCTCAAGACGCCATTGCCGAGCTTCCATCCTTGAACACCACCTTCCCTGAAACCCCGAAGCAACCGAGCGATGAGAAGAGGGGCGGTGCAGGCGCCGACGATGCGGACATAGACATAGAGGAGCAGCAGAAGCAGAAGCAGAACAGCCAGAATATGTCACTTTCGAAGTCGGCTTGCAGCAGCACCTCAGAGACGAGCAAGGGGTCCGGGTTGTCCCTGTCTCGGTCCGATATCCGCGTGAAAGCGAGGGAGAGGGCAAGGGAGAGAGCGGCCAAGGAGAAGAAGAAAGACAAGTGCAACAATAATCAGCATCAGAATAACCTTGTTCATCATCAGCAACAGCAACAGCATCAGCAGCAGCATCACAACATGAACCCAATTTCTCCTTCGTTTACTGAGCTACTCACAGGTGGCATCACCACTGCGGTTCCAACAACAACTAGTCCTACTTCTGATGAGCCTGCTGCTGCTCTCTTCCACAAAGCGGCAAGGCAACAACAACAGCAGCAGCAGCAGCAGCAATGGGGTTCAGCACCCATGGATTACTTCAACCAGGTTCTCGTAGGCCCCTCTTCATCTTCAAGAACCCACCAACACCAACACCAGATCCAACTGGGACATCATACCCTAGCTGAGGCCATATCCTTTAATAATGATCAGCAGCAGCAGCAGCAGCACCACTACTCCTTCATCCCTGATCAGTTCATGCCAGCTGTGGTTACATCCTCTCACTCTCATAACCATCATCACAGTGCTGGCGACACTGATTACAACCTCAACTTCACCATTTCTCCGGCTTCTGTATCTGCTTCTGCCTCTGGCCTTGCTGCTTACAACAACAATAGGGGGACCCTTCAGTCCAATTCTCCGTCACATTTCTTGCCTCACCTCCAGAGGTTCTCGCTGCCTATGGACGGATCCACTGTTCCTTTCTTCATTGGAGCTGCCGCACCCACCGCTGCTCCGCCTCCTCCCATCGACAACCACCAACACCATCAGTTCTCATCACCCGCATTTGATGGCCGCTTGCACCTCTACTACGGCGATGGAACCCGCCATTCCGACCACAAGGGCAAATCCAAGAACTCATGA 1389 0.5364 MEEEDEIQPQACKFPRLANGRTDPTNNAKIGAAWHHSSRIIRVSRASGGKDRHSKVMTSKGLRDRRVRLSVTTAIQFYDLQDRLGYDQPSKAVEWLIKSAQDAIAELPSLNTTFPETPKQPSDEKRGGAGADDADIDIEEQQKQKQNSQNMSLSKSACSSTSETSKGSGLSLSRSDIRVKARERARERAAKEKKKDKCNNNQHQNNLVHHQQQQQHQQQHHNMNPISPSFTELLTGGITTAVPTTTSPTSDEPAAALFHKAARQQQQQQQQQQWGSAPMDYFNQVLVGPSSSSRTHQHQHQIQLGHHTLAEAISFNNDQQQQQQHHYSFIPDQFMPAVVTSSHSHNHHHSAGDTDYNLNFTISPASVSASASGLAAYNNNRGTLQSNSPSHFLPHLQRFSLPMDGSTVPFFIGAAAPTAAPPPPIDNHQHHQFSSPAFDGRLHLYYGDGTRHSDHKGKSKNS* 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g5491 462 Pfam TCP family transcription factor 48 195 IPR017887 -
Amo13g5491 462 ProSiteProfiles R domain profile. 175 193 IPR017888 -
Amo13g5491 462 MobiDBLite consensus disorder prediction 143 172 - -
Amo13g5491 462 Coils Coil 186 206 - -
Amo13g5491 462 MobiDBLite consensus disorder prediction 119 142 - -
Amo13g5491 462 MobiDBLite consensus disorder prediction 109 201 - -
Amo13g5491 462 MobiDBLite consensus disorder prediction 176 200 - -
Amo13g5491 462 PANTHER TRANSCRIPTION FACTOR TCP24 1 461 - -
Amo13g5491 462 MobiDBLite consensus disorder prediction 207 226 - -
Amo13g5491 462 ProSiteProfiles TCP domain profile. 49 107 IPR017887 -
Amo13g5491 462 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 1 461 IPR005333 GO:0003700
Amo13g5491 462 Coils Coil 131 151 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g5491 Amo-Chr13 156005179 156011889 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g5491 34 461 TCP Transcription Factor Family AT4G18390 41.176 1.29e-73 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Amo13g5491 TCP 5.7e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g5491 - - lang:109362619 375.941