Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g5486 ATGGAGGAACAAAAGAAACGCAGCATTCCGGTGCTGCCATGGATGCGAGACCCTCTAGACCTTACTCTCTTCCAACAGATTCCTCTCCATACCCTCCCTTCYCTCCACCCTAAGTTGAAATTATCACTGGAAAACATGGGGATTTCCAACCTGTTCCCGGTGCAAGTTGCGGTATGGCAAGAAACCGTTGGGCCCGGGAAATTCCACCGAGACCTCTGCGTTAACTCCCCCACTGGCAGTGGCAAGACCTTGGCCTACGCGCTCCCCATCGTACAGTTGCTCTCCACACGCGTCGTCACGTGCCTACGCGCATTGGTCGTTGTCCCTACACGCGACCTCGCCTTCCAGGTCAAGCGTGTCTTCGACGCCATTGCCTCGCCCCTCGGCCTGCGCGTGGGACTCGCTGCCGGTCAGTCTTCCGTTGCGGACGAGATTTCAGAACTGGTGTACTCGCCGGAATGTGAGTTCGGGATTTCTTACGATCCGGAAGAGGTTGCATTTCGTGTTCGGAGACGATTGAGGAGTAAGGTAGATATATTGGTGGCAACCCCCGGAAGATTGATGGATCATATCAATACCACCAAAGGCTTCACTCTTGAGCATCTTCAATATCTTGTGGTTGATGAAACGGACCGGCTACTCCGTGAGGCCTACCAGTCATGGCTACCTGCTGTGCTTGAATCGGTGCAGTTGAATGAGGATAACACTTTTGAACCCAGTGATTCGTTTTTACCTTGTTCCATGGGTGTGTTAACAACCAGAAGAAGATGTGGAGTTGAGAGGGGTTTCAAGGATAAGCCCTACCCTAGGCTGGCAAAGATTGTCCTGTCTGCGACAATAACTCAGGACCCAGGCAGGCTTGTTCAGCTTGAGTTGCATCACCCTTTATTCCTGAGAGCTKGGCCAATGCGTTATCGACTCCCAGAAAATCTGCAATCCTTCAAATTGATCTGTGAAAGAAAGGTCAAACCCTTGTACTTGGTTGCCCTTTTAAAATCACTAGAAGGAGAAAAATGCATAATTTTTACAAAATCTGTGGAATCTACACATCGTCTCTGCAAATTGCTTAATTGTTTCGGAGATCTGCAAATTGATATCAAGGAGTACTCTGGTCTTCAACATCAACGTGTAAGAAGTAAGACCCTGAATAATTTTCGGAAAGGCGAGTTTCAAGTGCTTGTATCTTCTGATGCAATGACTCGTGGAATGGATGTGGAAGGGGTAAGAAATGTCATTAACTATGACATGCCCAAATACGTGAAGACCTATGTTCATCGGGCTGGTAGGACTGCTCGAGCTGGCCATACTGGGCGCTGTTTCACATTGATGTCCAATGATGAGGTACGACAATTTAAGAAGTTGATGCAAAAGGCTGAGGCTAGTTCTTGYCCCGAGCACATCATTCAATCCAGTTTGATTGAAGCACTTCACYCTACCTATGAATCAGCATTGAAAAAATTCAAGGAGAAGATTTCGAAGGCACGAAAGAAGGCAAATGATTAG 1503 0.4777 MEEQKKRSIPVLPWMRDPLDLTLFQQIPLHTLPSLHPKLKLSLENMGISNLFPVQVAVWQETVGPGKFHRDLCVNSPTGSGKTLAYALPIVQLLSTRVVTCLRALVVVPTRDLAFQVKRVFDAIASPLGLRVGLAAGQSSVADEISELVYSPECEFGISYDPEEVAFRVRRRLRSKVDILVATPGRLMDHINTTKGFTLEHLQYLVVDETDRLLREAYQSWLPAVLESVQLNEDNTFEPSDSFLPCSMGVLTTRRRCGVERGFKDKPYPRLAKIVLSATITQDPGRLVQLELHHPLFLRAXPMRYRLPENLQSFKLICERKVKPLYLVALLKSLEGEKCIIFTKSVESTHRLCKLLNCFGDLQIDIKEYSGLQHQRVRSKTLNNFRKGEFQVLVSSDAMTRGMDVEGVRNVINYDMPKYVKTYVHRAGRTARAGHTGRCFTLMSNDEVRQFKKLMQKAEASSCPEHIIQSSLIEALHXTYESALKKFKEKISKARKKAND* 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g5486 500 Gene3D - 311 500 IPR027417 -
Amo13g5486 500 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 103 456 IPR027417 -
Amo13g5486 500 CDD DEADc_DDX51 43 298 - -
Amo13g5486 500 Pfam Helicase conserved C-terminal domain 323 434 IPR001650 -
Amo13g5486 500 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 326 484 IPR001650 -
Amo13g5486 500 SMART helicmild6 350 434 IPR001650 -
Amo13g5486 500 Coils Coil 477 477 - -
Amo13g5486 500 PANTHER ATP-DEPENDENT RNA HELICASE DDX51 28 479 - -
Amo13g5486 500 Coils Coil 479 497 - -
Amo13g5486 500 Pfam DEAD/DEAH box helicase 53 284 IPR011545 GO:0003676|GO:0005524
Amo13g5486 500 Gene3D - 16 300 IPR027417 -
Amo13g5486 500 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 63 298 IPR014001 -
Amo13g5486 500 PANTHER RNA HELICASE 28 479 - -
Amo13g5486 500 CDD SF2_C_DEAD 312 442 - -
Amo13g5486 500 SMART ultradead3 47 314 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g5486 Amo-Chr13 155850182 155855325 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g5486 57 456 Eukaryotic Initiation Factors Gene Family AT3G19760 23.342 1.81e-26 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g5486 K14807 - cit:102616133 679.863