Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g5480 ATGACCCCTCGGATATATAATATATGTAGCTGTTACATTATACCCTGCACAAGAATCAATCTGATAGCTAAAAAGATGAATCAAAAGCAGCTTGAGCCACTACCTTTGCTAAGCAGCTTCCTTGGTTCTTCAACTTGTTCATCATCAGAACAAAATCAAAATCTGAAAGAAGATGTGACAGTGGCCTTGCACATTGGGCTCCCTGACAATTCCCATGATAATCATAATGTAGAACCTCTCCAAGCTCCAAATAATTACTGGATACCAACTGAAGAACAGATTATAATTGGTTTCAGCCACTTCTCTTGTCCTGTATGCCCAAAAACCTTCAACCGCTACAACAATCTTCAGATGCATATGTGGGGACATGGGTCAGAATACAGAAGAGGGCCAGAGTCACTGAAAAGAACACATCCAAGGCCATTGTTGGAGATAGCATGCTACTGCTGCAAAGGAGGGTGCAAGAACAACATAGAGCAYCCAAGRGCAAAGCCTCTSAAAGAYTTCAGAACACTGCAAACACACTATAAGAGGAAGCATGGACCCAAACCCTTCTCATGCCGCAAGTGTKCAAAGAATCTSGCTGTSAAAGGTGACTGGAGAACTCATGAGAAGAACTGYGGCAAACGCTGGCTTTGTCTTTGTGGCTCTGACTTCAAACACAAGAGGTCTCTTAAGGATCATATCAAAGCTTTTGGCTTTGACTGGAAATGA 714 0.4202 MTPRIYNICSCYIIPCTRINLIAKKMNQKQLEPLPLLSSFLGSSTCSSSEQNQNLKEDVTVALHIGLPDNSHDNHNVEPLQAPNNYWIPTEEQIIIGFSHFSCPVCPKTFNRYNNLQMHMWGHGSEYRRGPESLKRTHPRPLLEIACYCCKGGCKNNIEHPRAKPLKDFRTLQTHYKRKHGPKPFSCRKCXKNLAVKGDWRTHEKNCGKRWLCLCGSDFKHKRSLKDHIKAFGFDWK* 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g5480 237 Gene3D Classic Zinc Finger 100 123 - -
Amo13g5480 237 ProSiteProfiles Zinc finger C2H2 type domain profile. 101 128 IPR013087 -
Amo13g5480 237 SUPERFAMILY beta-beta-alpha zinc fingers 96 124 IPR036236 -
Amo13g5480 237 ProSitePatterns Zinc finger C2H2 type domain signature. 103 123 IPR013087 -
Amo13g5480 237 PANTHER ZINC FINGER PROTEIN WIP2 28 234 IPR043584 GO:0003700|GO:0010468
Amo13g5480 237 PANTHER TESTA 1 PROTEIN, PUTATIVE-RELATED 28 234 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g5480 Amo-Chr13 155780778 155782128 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g5480 59 233 C2H2 Transcription Factor Family AT1G34790 67.179 1.65e-91 270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Amo13g5480 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g5480 - - gmx:547675 356.681