Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g5479 ATGAAGAGGGAGCACCACCATCTACATCCCAACCCACACGATCCCTCACCCTCTTCCGTGCCTGCACCATCACCACCTTCATCTACGCCACCAACCACCTCCACCATCGCCGGAGCTTATTCCGGTTACTCAATCCACAACGGTACAACCTCTTCCGGAAAATCCAAGCTCTGGGACGAGTGCGCGGCGGCTGACGGCGGCATGGACGAGCTACTCGCGGTGGTTGGTTACAAGGTGAGGTCGTCGGATATGGCGGAAGTGGCGCAGAAGCTTGAGCAGCTTGAGGAAGCCATGGGGAACGCACGGGACGGAATCTCCCAACTCTCCAACGACACGGTTCACTTCAACCCCGCAGATATCTCCAACTGGCTCGAAACGATGATCAACAATCTCGACGTGCCGCCTCCTCCTCATCCACCGTTGCCGCAGCAACACTCCGTTGACTCCTCCTCCTCCTCCGCCGCCTTCCTCCCCCAAACTGATTCCTCCACCATCACAACTTCCGTGGATAGGGCCTTCGAGGACAGCTCCTCCTCCGACTACGACCTCAAGGCCATCGCAGGCAAGGCAATATACACCACCGCCGCCGCCACCGCCGATTCCCTATCTCCTTCCTCCAAGCGCGTGAAACCCTCGCCTGCCGAGTCGTCGTCCTCGACTCGGCCCCTCGTACTGGTTGACTCGCAGGAGAATGGGATCCGACTCGTCCACACACTCATGGCGTGCGCGGAGGCTGTCCACCAGAACAACCTGTCTCTTGCGGAGGCGCTCGTAAAGCAGATCGGGTTCTTGGCGGTGTCTCAGGTTGGAGCCATGCGCAAAGTAGCCACCTACTTCGCCGAAGCCCTCGCTCGCCGGATCTACGGTCTATACCCGGAGAACCCGATCCACCACTCGTTCTCCGATATGCTCCAGATCCACTTTTACGAGACCTGTCCCTACCTCAAGTTCGCTCACTTCACCGCCAACCAGGCCATCCTCGAAGCGTTCCAGGGAAAGAACCGCGTCCACGTCATCGATTTCAGCATGAACCAGGGGATGCAGTGGCCAGCGCTCATGCAAGCCCTGGCTCTTCGTCCGGGCGGTCCACCGGCATTCCGGTTAACCGGAATCGGACCTCCGGCGGCAGACAACTCCGATCACTTGCAGGAGGTAGGTTGGAAGCTCGCTCAATTAGCCGAAACGATCCACGTCGAGTTCGAGTATAGAGGATTCGTCGCGAACAGCTTGGCGGATCTTGACGCCTCGATGCTGGAGCTGAGGCCGAGTGAGACCGAGGCGGTGGCGGTTAACTCGGTTTTCGAGCTGCACAAGCTGCTCGCTCGTCCTGGCGCGGTGGAGAAGGTTCTGTCGGTGGTGAGGCAGATTCGACCGGAGATCGTGACGGTGGTGGAGCAGGAGGCGAACCACAATGGACCGGGTTTTCTTGACCGGTTCACGGAGTCCCTGCACTACTACTCCACCATGTTCGACTCGCTTGAGGGTTCGGTAAACTCGCAGGACAAGGTGATGTCGGAGGTGTACCTTGGGAAACAGATCTGCAACGTGGTAGCGTGCGAAGGGGTGGACCGGGTCGAGAGGCACGAGACACTGGGTCAGTGGCGGACCCGATTTGGTTCTGCTGGGTTCACACCGGTCCACTTGGGTTCAAATGCCTTCAAGCAAGCGAGCATGTTGCTAGCACTGTTTGCGGGTGGGGATGGATACAGAGTGGAAGAGAATAACGGTTGCCTTATGCTTGGTTGGCATACTAGACCCTTGATTGCCACCTCCGCGTGGCAACTCGCCACCAAATCGGTGGTTGCTCACTGA 1812 0.5866 MKREHHHLHPNPHDPSPSSVPAPSPPSSTPPTTSTIAGAYSGYSIHNGTTSSGKSKLWDECAAADGGMDELLAVVGYKVRSSDMAEVAQKLEQLEEAMGNARDGISQLSNDTVHFNPADISNWLETMINNLDVPPPPHPPLPQQHSVDSSSSSAAFLPQTDSSTITTSVDRAFEDSSSSDYDLKAIAGKAIYTTAAATADSLSPSSKRVKPSPAESSSSTRPLVLVDSQENGIRLVHTLMACAEAVHQNNLSLAEALVKQIGFLAVSQVGAMRKVATYFAEALARRIYGLYPENPIHHSFSDMLQIHFYETCPYLKFAHFTANQAILEAFQGKNRVHVIDFSMNQGMQWPALMQALALRPGGPPAFRLTGIGPPAADNSDHLQEVGWKLAQLAETIHVEFEYRGFVANSLADLDASMLELRPSETEAVAVNSVFELHKLLARPGAVEKVLSVVRQIRPEIVTVVEQEANHNGPGFLDRFTESLHYYSTMFDSLEGSVNSQDKVMSEVYLGKQICNVVACEGVDRVERHETLGQWRTRFGSAGFTPVHLGSNAFKQASMLLALFAGGDGYRVEENNGCLMLGWHTRPLIATSAWQLATKSVVAH* 604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g5479 603 MobiDBLite consensus disorder prediction 31 54 - -
Amo13g5479 603 Coils Coil 84 111 - -
Amo13g5479 603 Gene3D - 67 131 IPR038088 -
Amo13g5479 603 SMART DELLA_2 69 141 - -
Amo13g5479 603 MobiDBLite consensus disorder prediction 144 161 - -
Amo13g5479 603 MobiDBLite consensus disorder prediction 14 30 - -
Amo13g5479 603 ProSiteProfiles GRAS family profile. 226 594 IPR005202 -
Amo13g5479 603 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 43 595 IPR005202 -
Amo13g5479 603 MobiDBLite consensus disorder prediction 130 161 - -
Amo13g5479 603 Pfam GRAS domain family 235 594 IPR005202 -
Amo13g5479 603 MobiDBLite consensus disorder prediction 202 222 - -
Amo13g5479 603 MobiDBLite consensus disorder prediction 1 54 - -
Amo13g5479 603 PANTHER DELLA PROTEIN GAI1-RELATED 43 595 IPR030006 GO:0003712|GO:0005634
Amo13g5479 603 Pfam Transcriptional regulator DELLA protein N terminal 69 135 IPR021914 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g5479 Amo-Chr13 155760566 155763661 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g5479 38 597 GRAS Transcription Factor Family AT2G01570 65.772 0.0 753
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Amo13g5479 GRAS 1.7e-138 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g5479 K14494 - cpap:110823749 833.558