Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g5471 ATGGACAAGGATAAGGACAAGTCGTCCCACAGTTTTCTTCATAATCTCATCAAACACATTAAATTGGGTTCCAATAAAGAGCGAAGCAATGAAGCTGAAATAAAGCAAATGGCTGCGCAGGAGCAGAAGGTCTTTTCCTATGAAACGTTAGTTGCAGCTACCAAGAATTTCAGTGCTCTGAATAAGCTTGGTGAGGGAGGCTTTGGACCCGTTTATAAGGGGAAGCTGAGTGACGGGAGAGAGGTTGCAGTAAAAAAGCTATCACACACTTCAAATCAAGGGAAGAAAGAGTTCATGAATGAGGCAAAATTATTGGCTCGTGTACAGCACCGGAATGTGGTGAATTTGTTGGGCTATTGTGCCCATGGCGGAGAGAAGCTTCTTGTCTATGAGTATGTTCCTCATGAGAGCCTTGACAAGCTTCTGTTCAAGGTGCACAAGAGGGGGGAGCTAGATTGGAAAAGGAGGCTGGGGATAATAACAGGAGTGGCAAAGGGGTTGCTTTATCTTCACGAAGACTGTCACCATTGCATCATCCACCGCGACATCAAGGCCAGTAACATCTTGCTCGATGACAAATGGCAGCCGAAGATCGCAGACTTTGGCATGGCCCGTCTCTTCCCCGAAGATCAGAGCCAGGTCAATACTCGTGTCGCTGGAACCAATGGTTATATGGCACCGGAGTATGTAATGCATGGACAGCTGTCCGCCAAGGCTGACGTATTTAGCTATGGAGTGTTGGTGTTGGAGTTGATCAGTGGCCAACGAAACTCTAACTTTAATTTGGATGTGGATGCACAGAATCTACTTGATTGGGCATACAAGCTGTACAAGAAGGGGAGGAACTTGGAAATTGTGGATTCCGTGTTAGCATCCACAATGGAAGCAGAACAAGTAGCAATGTGCATTCAGCTTGGTCTGCTGTGTACTCAGGGTGACCCAAAGCTCCGACCCGACATGAGGCGCGTTGTGGTAATGCTGTCTAGGAAGCCAGGCCACATGGAAGAACCTACCAGACCGGGTGTGCCTGGTTCCAGATACAGGAGACGACCCAGGCAGCATACTGGATTGTCCTCCGCCACTCCTGGTACCTCCGGTGCCTCGGATTCTCAGACTTCTGATTCAAGTAGCAACACAACCAGTGTTACTGCTACTAGTGCTACTACTCCAACTGCAACTAGAACTAGAACAAGAACAAACTCGGGAGTTGCGGAATCATCGGACTCAAGAGGGAAACGACCAATGGAGGAGGGTTAG 1257 0.4821 MDKDKDKSSHSFLHNLIKHIKLGSNKERSNEAEIKQMAAQEQKVFSYETLVAATKNFSALNKLGEGGFGPVYKGKLSDGREVAVKKLSHTSNQGKKEFMNEAKLLARVQHRNVVNLLGYCAHGGEKLLVYEYVPHESLDKLLFKVHKRGELDWKRRLGIITGVAKGLLYLHEDCHHCIIHRDIKASNILLDDKWQPKIADFGMARLFPEDQSQVNTRVAGTNGYMAPEYVMHGQLSAKADVFSYGVLVLELISGQRNSNFNLDVDAQNLLDWAYKLYKKGRNLEIVDSVLASTMEAEQVAMCIQLGLLCTQGDPKLRPDMRRVVVMLSRKPGHMEEPTRPGVPGSRYRRRPRQHTGLSSATPGTSGASDSQTSDSSSNTTSVTATSATTPTATRTRTRTNSGVAESSDSRGKRPMEEG* 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g5471 418 Pfam Protein tyrosine and serine/threonine kinase 60 326 IPR001245 GO:0004672|GO:0006468
Amo13g5471 418 MobiDBLite consensus disorder prediction 354 407 - -
Amo13g5471 418 Gene3D Phosphorylase Kinase; domain 1 18 132 - -
Amo13g5471 418 PANTHER RECEPTOR-LIKE KINASE 9 381 - -
Amo13g5471 418 SUPERFAMILY Protein kinase-like (PK-like) 42 342 IPR011009 -
Amo13g5471 418 ProSitePatterns Serine/Threonine protein kinases active-site signature. 178 190 IPR008271 GO:0004672|GO:0006468
Amo13g5471 418 Gene3D Transferase(Phosphotransferase) domain 1 133 337 - -
Amo13g5471 418 SMART serkin_6 57 327 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo13g5471 418 MobiDBLite consensus disorder prediction 327 418 - -
Amo13g5471 418 CDD STKc_IRAK 63 329 - -
Amo13g5471 418 ProSiteProfiles Protein kinase domain profile. 57 336 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo13g5471 418 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 9 381 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g5471 Amo-Chr13 155639560 155643201 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g5471 45 341 Receptor kinase-like Gene Family AT4G11530 54.515 4.82e-113 344
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Amo13g5471 PK_Tyr_Ser-Thr 2.9e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g5471 - - gmx:100795769 635.95