Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g5466 ATGAAGTGGAGGTGTGCCCTTTTTGAGTGCTGCTTTGCGTGCACTACTTCTGATGGATCGACCGAGTTTGATATTAAGTCACAGTTACCAAACTTGGGTTATACTGCACTTGCCAGTGCCTGTCATCATTTTCATCCATCCAAGAATCTTGGAACTAGAGCATATCGCAAGGTGTATCATGGTATACTAGAAGATTTTCGTGAAGTTGCAATCCAACGCTTATCGGCAAGTGAATTCCAATTCATTGAAAAGCATGTAGAAGGCTGCAGAAGCAGAATCTTAAGTCTTTTGCCGCATAAAAATGTGGTGTCTGTGTATGGGTACAGTTCTAACGGGAAAGAATTCCTGCTAGCACATGAGTACGTTCCAAATGGTGCTCTTCATAATCATCTTCATGGCCAAGGATCAAAGCGTCTCACGTTGCCATGGGATACCCGATTGGATATTGCTATTGATGTTGCCAATGCATTGGCATATCTTCACTCTAATGGCATCCTCCACAGCCAGGTAACATCCCACAATATTCTTCTGGACGAAAACTTAGGTGCAAAAGTTAAGAACTGTCTTGGATCATGGCAACTTGCCAGAGGCCCTTCTGGTTTTGTTTCACATAATGGTGAATTTTGTCTTAACTTCAAGAATGACGTATACAGCTTTGGGGTGGTGTTGTGTGAGCTTTTAACATCCAAGCCCTCGTACATGAAGAGGGAAAACTTACTAGACATGAAGCTTGCTACTTTCACAATCAGTAGAATCGAAAACAATGCGTTGGAGGAGATATTGGATCCAAGCCTTGGGTTTGAATCAGACCCTGCTGTAAAGCAGATGCTAACTTCTGTGGCAGTGCTAGCATATCAGTGCTTGATTTATGATGTGTCTCTAAGCCCATCATCCATGGCACAGGTGCTTGAGGGTTTGAAGGGCATCAGAGAACAGAGAAGGGACTTAAATTTGACTGCAGATTTCAAGTCCGAAACTCTGACGTTGGCGTTTTCCTGGGATTACATGAAGTCACAATTCCAAATCTTTTCTTATGATGTGCTTGTAAAAGCAACTAACCATTTTGAGAATTATGTTGGGAAAGGAGGCTTTGGAACTGTTTACTATGGGAAGCTCCCACAAGGATATGAGGTAGCAATCAAACGTTTCCATGAAAAGAAAGAGAAGACAAGAAAGCAATTCACGAGAGAAGTTGAGATCCTAAGTCTCATGCGCCATCAGAATCTGGTCTCGCTGTATGGCCGCAGTTCTGATGACAGTGAAGAACTCCTGTTAGTTTACGAGTATGTCTCCAACGGTTCTCTATCAACCTATCTCCATCGAAATTCTGGAAACATACTACCATGGGCTACCAGATTAAATATTGCCATTGAGACTGCTTCTGCACTAGCCTATCTTCACCATTCTGGTATAATTCACCGCGATGTCAAACCCAGCAACATTCTCTTGGACAAAAATCTATGTGCCAAAGTTGCAGATTTCGGCCTTGCGCGGTTTCTTCCACTTGGGGATCTTGATTTTGTCACTCATGTTTCTACTGCTCCAGTAGGAACCCCTGCTTATATAGATCCTGAGTACTTTGAATTCAATAAGGTGAGTGACAAAAGCGACGTATATAGCTATGGCATGGTTTTGTTTCAGCTCATATCATCCATGCCTTCCACTGTAAGGCAGGGACCGCAGCTTTTTACTTTGGCTAACTTTGCAATGGGAAAGATCTTGAACAATGAGTTGGAAGAGCTTGTGGATCCAAGTCTTGGTTTCCACTCGGACAATAGTGTTATGGAAACTATAACTGCAGTGGCAGAGTTGGCATTTCAGTGTGTGCAGCATCCTAAAGAATTCAGGCCATCAATGAAGCAGGTCTTAGAGACTTTGGAGGGCATAAAGCAAGGCTCTTGGGGGTTCAACCAGATAACATAA 1923 0.4295 MKWRCALFECCFACTTSDGSTEFDIKSQLPNLGYTALASACHHFHPSKNLGTRAYRKVYHGILEDFREVAIQRLSASEFQFIEKHVEGCRSRILSLLPHKNVVSVYGYSSNGKEFLLAHEYVPNGALHNHLHGQGSKRLTLPWDTRLDIAIDVANALAYLHSNGILHSQVTSHNILLDENLGAKVKNCLGSWQLARGPSGFVSHNGEFCLNFKNDVYSFGVVLCELLTSKPSYMKRENLLDMKLATFTISRIENNALEEILDPSLGFESDPAVKQMLTSVAVLAYQCLIYDVSLSPSSMAQVLEGLKGIREQRRDLNLTADFKSETLTLAFSWDYMKSQFQIFSYDVLVKATNHFENYVGKGGFGTVYYGKLPQGYEVAIKRFHEKKEKTRKQFTREVEILSLMRHQNLVSLYGRSSDDSEELLLVYEYVSNGSLSTYLHRNSGNILPWATRLNIAIETASALAYLHHSGIIHRDVKPSNILLDKNLCAKVADFGLARFLPLGDLDFVTHVSTAPVGTPAYIDPEYFEFNKVSDKSDVYSYGMVLFQLISSMPSTVRQGPQLFTLANFAMGKILNNELEELVDPSLGFHSDNSVMETITAVAELAFQCVQHPKEFRPSMKQVLETLEGIKQGSWGFNQIT* 641
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g5466 640 ProSitePatterns Protein kinases ATP-binding region signature. 359 381 IPR017441 GO:0005524
Amo13g5466 640 SMART serkin_6 353 624 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo13g5466 640 ProSitePatterns Serine/Threonine protein kinases active-site signature. 471 483 IPR008271 GO:0004672|GO:0006468
Amo13g5466 640 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 24 314 IPR044652 -
Amo13g5466 640 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 338 632 IPR044652 -
Amo13g5466 640 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 24 314 - -
Amo13g5466 640 Gene3D Phosphorylase Kinase; domain 1 16 121 - -
Amo13g5466 640 Gene3D Phosphorylase Kinase; domain 1 330 429 - -
Amo13g5466 640 ProSiteProfiles Protein kinase domain profile. 353 629 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo13g5466 640 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 338 632 - -
Amo13g5466 640 ProSiteProfiles Protein kinase domain profile. 44 283 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo13g5466 640 SUPERFAMILY Protein kinase-like (PK-like) 336 627 IPR011009 -
Amo13g5466 640 Gene3D Transferase(Phosphotransferase) domain 1 430 635 - -
Amo13g5466 640 Gene3D Transferase(Phosphotransferase) domain 1 122 328 - -
Amo13g5466 640 Pfam Protein tyrosine and serine/threonine kinase 355 626 IPR001245 GO:0004672|GO:0006468
Amo13g5466 640 Pfam Protein tyrosine and serine/threonine kinase 47 185 IPR001245 GO:0004672|GO:0006468
Amo13g5466 640 CDD STKc_IRAK 359 629 - -
Amo13g5466 640 SUPERFAMILY Protein kinase-like (PK-like) 37 311 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g5466 Amo-Chr13 155602129 155605759 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g5466 339 631 Receptor kinase-like Gene Family AT1G25390 51.171 2.13e-90 291
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Amo13g5466 PK_Tyr_Ser-Thr 1.1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g5466 - - aip:107634816 1235.32