Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g5464 ATGGCGGTGCAAATACATGAAAACCTTGTTAGATCAACGTTTACTATATCTCTGTTATGCTTGGCCACTTTGGCAAAACTTTCAATCTCTCAAGAAAGTGACAGATATGCAGCGTGCTCCAAGGCTTACAGCTGCGGAGAAATAGCCAACATCTACTATCCTTTCTGGGGAGGGAGCAGGCCAAGCTATTGCGGCATCAGCCAGCAATTCAAGCTCAGCTGCCACGCTAATCGCAACACCTCCATTCAAATTGGCTCACAGACTTTTCATGTGCTGAATATCGATCAACCTGCTTGCAACATAACAATGGTTAGAACTGGGATTGCCTATGATCAATGTTCTTCTCATTTAACCAACACTTCCTTAGAGACAAGCATGTTTCGCTTCTCGCCAAACGTTAGGAACGTCTCAATCTTCTATGACTGCGCTGGCAACAACAGTGAAACAATACACTCTTTCCCTTGCAAGGATGATCCCAAAAAGCGAGCTTTTTATGGGGATTTGGGTGTGGCGGTGGCTCAGAACTGCCAAGGAGTTCATGTGGAAGTGCAGGCGATACAGGAAGTGAGAGCTAATGAGGATGGAATTGAAGGGTTGAATAGAGCCTTGAGTGCAGGGTTTGATGTGAATTATAGTTCACCTTTTGACATTCAAAGATGCATAGGATGCATGTCGACTAAAGGAATATGCGGATCCAAAGATGAGTTTCGGTTTACTTGCTATTGCCCTGATGGAACTAATCATGCTTTGGATTGTTCTCATCATCATAGTAAATTGAATTGGAAAAAGAAAGTTGCCATAGGAGTTGCTGCTGCTGTGCTTAGTGCAGTTATATTAGGCATTGCCTTTAGTCTCTATTACCGTAGATGGAAGAAGAATTTTCAAGATGTATCATTTGTACCATCTCACAGCATGTCTTCTTTTTTAGAAGACACTGAAAAGGGACATCAAAAATACTCTGGACTCCAATTCTTTGCCTATAGAGAACTTCAAGAGGCCACAAACAACTTTGATCCAGACAGAGAACTAGGAGATGGAGGCTTTGGGAAAGTATATTTTGGAAAACTTGGAGACGGCCGTTTTGTTGCTGTGAAAAAGATGTATGAGAACAATTACAGGACAGTAGAGCAATTCATGAATGAAGTTGAGATCTTAACAGGCTTGCGCCACCAAAATCTGGTATCACTGTATGGATGTAATTCCAGCCACAGCAGCGAATTAATGCTTGTGTACGAATATGTTTCGAACGGAACAGTTGCAGATCATCTCCACGGACAGAAAGCGAAATCTGGTGCTCTCTGTTGGGATACCAGAATGAAGATTGCTATAGACACAGCTAGTGCATTGGTATATCTTCATGCTTCAGACATCATCCATAGAGATGTTAAAACCAATAATATCCTTCTTGATGATCACTTTAGAGCCAAAGTAGCCGATTTTGGACTCTCAAGACTATTTCCAAACCACTTAACTCACATTTCAACAGCGCCACAAGGCACACCTGGTTATGTTGATCCGGAGTACCACGAGTACTACCAGCTGACAGATAGAAGCGATGTATACAGCTTTGGAGTTGTGCTGATTGAACTAATATCTTCAATGCGTGCAGTTGACATAACAAGGCATAGGCATGAGATCAATTTGTCCAACATGGCCATGAAGAAGATTCAGAGTGGTGCGTTGCATGAGATTGTAGACAAAAGCCTTGGATTCGAATCGGATTTGAGGGTAAGGAAGATGATCAATGGTGTTGCAGAGTTGGCATTTCGGTGCTTGCAGAGTTCTAAGGATATGAGGCCTTCAATGGTACAAGTGTTGGATACTTTGAAGGATATACAAAGTGATGGGAAATATAAAAGCAAACGAGAGGTGATGGATATATCAAAACAAGAAGATAACGATGCAACCCTGCTTAAGAACGAACCACCTCCACCTTCACCTGATTCAAATGGGAAAGTATAG 1962 0.4215 MAVQIHENLVRSTFTISLLCLATLAKLSISQESDRYAACSKAYSCGEIANIYYPFWGGSRPSYCGISQQFKLSCHANRNTSIQIGSQTFHVLNIDQPACNITMVRTGIAYDQCSSHLTNTSLETSMFRFSPNVRNVSIFYDCAGNNSETIHSFPCKDDPKKRAFYGDLGVAVAQNCQGVHVEVQAIQEVRANEDGIEGLNRALSAGFDVNYSSPFDIQRCIGCMSTKGICGSKDEFRFTCYCPDGTNHALDCSHHHSKLNWKKKVAIGVAAAVLSAVILGIAFSLYYRRWKKNFQDVSFVPSHSMSSFLEDTEKGHQKYSGLQFFAYRELQEATNNFDPDRELGDGGFGKVYFGKLGDGRFVAVKKMYENNYRTVEQFMNEVEILTGLRHQNLVSLYGCNSSHSSELMLVYEYVSNGTVADHLHGQKAKSGALCWDTRMKIAIDTASALVYLHASDIIHRDVKTNNILLDDHFRAKVADFGLSRLFPNHLTHISTAPQGTPGYVDPEYHEYYQLTDRSDVYSFGVVLIELISSMRAVDITRHRHEINLSNMAMKKIQSGALHEIVDKSLGFESDLRVRKMINGVAELAFRCLQSSKDMRPSMVQVLDTLKDIQSDGKYKSKREVMDISKQEDNDATLLKNEPPPPSPDSNGKV* 654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g5464 653 ProSiteProfiles Protein kinase domain profile. 337 612 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo13g5464 653 Pfam Wall-associated receptor kinase galacturonan-binding 39 103 IPR025287 GO:0030247
Amo13g5464 653 SMART serkin_6 337 614 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo13g5464 653 Gene3D Phosphorylase Kinase; domain 1 308 413 - -
Amo13g5464 653 ProSitePatterns Serine/Threonine protein kinases active-site signature. 457 469 IPR008271 GO:0004672|GO:0006468
Amo13g5464 653 Gene3D Transferase(Phosphotransferase) domain 1 414 627 - -
Amo13g5464 653 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 14 650 IPR044652 -
Amo13g5464 653 SUPERFAMILY Protein kinase-like (PK-like) 319 609 IPR011009 -
Amo13g5464 653 ProSitePatterns Protein kinases ATP-binding region signature. 343 366 IPR017441 GO:0005524
Amo13g5464 653 Pfam Protein kinase domain 340 607 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo13g5464 653 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.2 14 650 - -
Amo13g5464 653 MobiDBLite consensus disorder prediction 616 636 - -
Amo13g5464 653 Pfam Wall-associated receptor kinase C-terminal 171 245 IPR032872 -
Amo13g5464 653 MobiDBLite consensus disorder prediction 616 653 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g5464 Amo-Chr13 155593998 155597287 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g5464 15 649 Receptor kinase-like Gene Family AT1G25390 42.527 4.13e-147 439
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Amo13g5464 Pkinase 2.1e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g5464 - - gmx:100794703 803.512