Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g5461 ATGAAGAAGCTCTCAAGGCCTGAGAGGATCCTGAGGGAAGTTGTTTCTGAGTCTGTTCCCGCCGCAGCACTGATGATTCAGGAGCTTGCTGATGAAGTCATAGCTTCAACCAAGGAATACCTGAAGAATCTCATTGAGAAGCCTGACAAGAAAGATGAATTGGTCAGCCTACAAAGCAGGCTTGAAAGAAGATCTGACCTCTCCAAAGAGACTCTTTCCAAGTGCCATAAGGTGCAGTTGGAGATTCTGGTTTCTGTCAAGATGGGGCTTGCAAGCTTCTTATATGGTAAAATTCAATTATCTGAGATGGTAGAGGTTTTCTTATATAGGAGATGTAGGAATGTTAACTGCAAGAGTCTGCTTCCTGTTGATGACTGTGACTGCAAGATTTGCTCAGGGAATAAGGGATTTTGTAGTTCGTGTATGTGTCCTATTTGTTTGAACTTCGATTGCGCAAGCAATACTTGTAGTTGGGTTGGTTGTGATGTTTGTTCCCATTGGTGCCATGCTGTCTGTGGCATTCAGAGGAACCTCATCAAGCCCGGTCCGAGCTTGAAGGGACCTGCGGGGACCTCAGAAATGCAGTTTCATTGTATTGGCTGTGGACATGCTTCTGAAATGTTTGGGTTTGTTAAGGATGTGTTCATGTGTTGTGCAAAGGATTGGGGACTTGAAACCTTGATGAAGGAGCTCGACTGTGTGAGGAAGATTTTTAGGGGAAGTGAAGACCGTAAAGGGAAAGAATTGCATGTCAAAACTGATGACATGCTGTTAAAGCTTCAAACTAAAATGGCTTCTCCTTCAGATGCCTGCAATTATATCACACAATTTTTCAACTATGCAGATAACTTGCCAGACTTTCCCCTTTCTGCCATATCTGCAAAGGATATAGCATCATCTCAATCCAACATTACGAAAGACACACCATCTCTTCCAAAAACTAGTTCCTTAATGCCTAAATATGCTTATGACATGAGCTATTCTAGGCCACATTCTGGTGCCTTGCCAAATGATCTTCATCAAAAGGACTTCAAAGCTTCCATATTAAGTGAACTAAAAACTGAGGCTGATTTCCAACTGGGGGCTTTGCTAAGGAAAGGTGGACTTGACAGCTTGGAGAGCATTGTGCGGATAAAGGAGGCGGAAGCGAAAATGTTTCAGACGAAGGCGGATGAAGCAAGGAGGGAGGCAGAAGGGTTCCAGAAGATGATCAGGACAAAGACCGCACAGATGGAAGAAGAGTATGCCGAAAAGCTAGCCAAACTGTGTTTGCATGAGACTGAGGAAATGAGGAGGAAGAAACTAGAAGAACTCAAAGTCTTGGAAGGTTCCCATTATGATTACTATAAGATGAAGAAGAGAATGCAAGATGAGATAGATGGTTTATTGGAGAGAATGGAGGCAACAAAGCAGCAATGGGTTTAA 1425 0.4323 MKKLSRPERILREVVSESVPAAALMIQELADEVIASTKEYLKNLIEKPDKKDELVSLQSRLERRSDLSKETLSKCHKVQLEILVSVKMGLASFLYGKIQLSEMVEVFLYRRCRNVNCKSLLPVDDCDCKICSGNKGFCSSCMCPICLNFDCASNTCSWVGCDVCSHWCHAVCGIQRNLIKPGPSLKGPAGTSEMQFHCIGCGHASEMFGFVKDVFMCCAKDWGLETLMKELDCVRKIFRGSEDRKGKELHVKTDDMLLKLQTKMASPSDACNYITQFFNYADNLPDFPLSAISAKDIASSQSNITKDTPSLPKTSSLMPKYAYDMSYSRPHSGALPNDLHQKDFKASILSELKTEADFQLGALLRKGGLDSLESIVRIKEAEAKMFQTKADEARREAEGFQKMIRTKTAQMEEEYAEKLAKLCLHETEEMRRKKLEELKVLEGSHYDYYKMKKRMQDEIDGLLERMEATKQQWV* 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g5461 474 Pfam PHD - plant homeodomain finger protein 112 236 IPR032881 -
Amo13g5461 474 Coils Coil 452 474 - -
Amo13g5461 474 PANTHER VERNALIZATION-INSENSITIVE PROTEIN 3 2 474 IPR004082 -
Amo13g5461 474 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 103 124 IPR004082 -
Amo13g5461 474 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 370 390 IPR004082 -
Amo13g5461 474 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 64 79 IPR004082 -
Amo13g5461 474 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 222 241 IPR004082 -
Amo13g5461 474 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 149 169 IPR004082 -
Amo13g5461 474 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 25 47 IPR004082 -
Amo13g5461 474 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 409 431 IPR004082 -
Amo13g5461 474 Pfam Coiled-coil region of Oberon 341 463 IPR032535 -
Amo13g5461 474 CDD PHD_OBE1_like 142 201 - -
Amo13g5461 474 PANTHER PROTEIN OBERON 3 2 474 - -
Amo13g5461 474 Coils Coil 376 410 - -
Amo13g5461 474 PIRSF UCP025218 2 474 IPR004082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g5461 Amo-Chr13 155524189 155528105 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g5461 112 241 PHD Gene Family AT5G57380 26.718 3.12e-08 54.3