Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g5447 ATGTGCCTATTCTTCCGCTGGTGGCAAAAGAGTTCAAGGGACAGTAGTAACCCCGAAAACTCTACCACGTGCCGCCACTTTACCATCGCCGAGATAAGATCCGCCACCAACAACTTCGACCAAGCCCTAATCATAGGCCGCGGAGGCTTCGGCAATGTTTACAAAGGCAAGTTCCCCAAGCACCGCTCCCCCGTGGCCATCAAGCGCCTCAATCAGGGTTCCAATCAAGGACTCCGCGAGTTCCAAACGGAGATCAAGATGCTGTCCCACCTCCGCCATCCTCACCTCGTCTCCCTCATCGGCTACTGCCAGGACGCCGCCGAGATGATCCTCGTCTACGACTACATGGCGCGTGGGACCCTACGCGAGCACCTCTACGACTACGACACCAGCAACAACCAACAACCCCTCTCGTGGAACAAACGCTTGGAGATATGCCTTGCTGCGGCGCGTGGGCTTCACTTCCTGCACACAGAGAACGTGATCCACCGGGACGTGAAGAGCACGAACATACTGCTTGACGATGATTGGATCGCGAAAGTTGCGGATTTCGGTTTGTCGAAGGACGGGCCGAATGGTTCCCACGTGACAACGGACGTGAAGGGTAGTTTGGGGTATTTGGACCCGGAGTACTACATGAGTCAGTGGTTGAGTCAGAAGTCTGACGTGTACTCGTTCGGGGTTGTTTTGTTGGAGGTGTTGTGTGGGAGGCCAGTGATCAAGCGTAGGATCGAGAATAGGCAGGAGGAGTCCCTTGTGATTTGGGTAAAAAGCTGTTATCAAGATGGCAACGTTGATCTGACGGTGGATCCTGCCTTGAAGGGTACCATTGGGCAAAAGTGTTTGGACAAGTTTGTTGAGGTTGCCTTGAGTTGTTTGAACGATCATGGCAAGGAACGCCCTTTCATGAAGGATGTGGTGAAGGGCTTGGAGTGTGCCTTGAGCCTGCACCTCACTGGTGCCCATCCAAAAAGGGGCAAGAACAACAGCGATGACGTGGCAGTCAGCTTCACCGTCCTTGTGGGCCATGATTATGATGACAATTCTCGGGGACTAGTCATGACCGACTCTCAGTGTATTATTACTACTACCAGTAGTAATGCTGCAACTACCACTACCACTACCACTACCAGCACCACCACAAGCACCACCACTTCCAACGAGGAGGAGAAAGCTTTGGTGCAGCATGGGGTCTTCTCTCACCTTGGTAATCCAACACCTACATACTTATCTGTTTGCACTGATAAATGA 1251 0.526 MCLFFRWWQKSSRDSSNPENSTTCRHFTIAEIRSATNNFDQALIIGRGGFGNVYKGKFPKHRSPVAIKRLNQGSNQGLREFQTEIKMLSHLRHPHLVSLIGYCQDAAEMILVYDYMARGTLREHLYDYDTSNNQQPLSWNKRLEICLAAARGLHFLHTENVIHRDVKSTNILLDDDWIAKVADFGLSKDGPNGSHVTTDVKGSLGYLDPEYYMSQWLSQKSDVYSFGVVLLEVLCGRPVIKRRIENRQEESLVIWVKSCYQDGNVDLTVDPALKGTIGQKCLDKFVEVALSCLNDHGKERPFMKDVVKGLECALSLHLTGAHPKRGKNNSDDVAVSFTVLVGHDYDDNSRGLVMTDSQCIITTTSSNAATTTTTTTTSTTTSTTTSNEEEKALVQHGVFSHLGNPTPTYLSVCTDK* 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g5447 416 PANTHER RECEPTOR-LIKE PROTEIN KINASE FERONIA 11 378 - -
Amo13g5447 416 Gene3D Phosphorylase Kinase; domain 1 5 115 - -
Amo13g5447 416 CDD STKc_IRAK 45 311 - -
Amo13g5447 416 Pfam Protein tyrosine and serine/threonine kinase 44 309 IPR001245 GO:0004672|GO:0006468
Amo13g5447 416 ProSitePatterns Protein kinases ATP-binding region signature. 45 68 IPR017441 GO:0005524
Amo13g5447 416 ProSitePatterns Serine/Threonine protein kinases active-site signature. 161 173 IPR008271 GO:0004672|GO:0006468
Amo13g5447 416 SMART serkin_6 39 303 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo13g5447 416 Gene3D Transferase(Phosphotransferase) domain 1 116 329 - -
Amo13g5447 416 ProSiteProfiles Protein kinase domain profile. 39 325 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo13g5447 416 PANTHER OS07G0166700 PROTEIN 11 378 IPR045272 GO:0004714|GO:0006468
Amo13g5447 416 SUPERFAMILY Protein kinase-like (PK-like) 22 308 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g5447 Amo-Chr13 155355006 155356649 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g5447 12 405 Receptor kinase-like Gene Family AT3G51550 48.500 5.33e-116 357
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Amo13g5447 PK_Tyr_Ser-Thr 1.3e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g5447 - - adu:107482052 780.785