Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g5419 ATGGTTGCTCAACACCCTCAGCCTCAGCCTCAGCCACAGCCACAGCCACAGCCACAGCCACAGCAACCTCCTTCGTCTGCACAAGACGAGGCTTTGAAGAGGAACACCGATTGCGTCTACTTTCTCGCATCTCCTTTGACATGCAAAAAGGGAAATGAATGTGAGTACCGCCATAGTGAGTATGCTCGGGTAAATCCTAGAGATTGCTGGTATTGGTTGAATGGAAATTGCTTGAACCCCAAATGTGCTTTCCGTCATCCGCCACTTGATGGCTTGTTAGGTTCACCGGCAGCCACTGCTGCTGGGCCATCTGTTCCCTCGTCACAGATTGCAGCGACACCTGCAGCACCTGCAGGGCCTTATAATTCTACTAAACAAGCTGTCCCTTGTATTTTCTTTCAGAAGGGTCTTTGCTTAAAAGGTGACAGATGTGCTTTCTTGCATGGACCAAATCCTACTGCTGGTAACAAAGCTGTTAATCAGGTCCCAGTGTCTAACCAGGGAACTGAGACTCCAAATCTTAAGAAGCCATTTGGCAGCAGAGATAAAAATGCACAAGAAAGGAGAAGCTCCCAAGGAAACATTCCAAAATTAGTTGGAGGTCTTGAAATTAAACCTTCCCCAAAGGTCGAAACTGCTCCACAAAGAAATAATTTTGAATTGCTGAAGGAGAAGCATGTGGCACCACCACCTGCAGGATTTGATGATGAGGCTTCAAGATTTAAAATGAGAAGTATTTCCCCAGTGGCTAACGGGCCTACTGCTGCCCGTTCAAATCGACTGCATCAAGTCCGTATGCCAGATGATAATAGTTTCCACAATGGTAAGGACAGTGATGAATTCCTCAGAGAATCCTCTCCTGGATTTGATGTTCTTGTAGCTGACGAGCTTAGAAATTCTGATTACTATCATGGGGAAGATGAATTTGGTAATGCAAGAGGTCCAGATGAAAGGAACTTGGACTCTTTGAATGATTATGACTTGGGGCATTCTGCTGATTATGGTTTAGCGCGTGATATTGATCAAGAAAGATTTCGTGTTCCTCAATCCTACGACTCATATGATCACATGCAGGAGCCATACGCTTGGGAGCAGCATAGAAAGGCCCCAGGCCATTTAGAAAGAAGGTCTCACCGCAGATCTGATAGTCCTGACAATGTAGAGGTCTCAGATCTCCGACATCGTTTATCTAAGCGCAGGAGGGTTAACGGTTTGAAATCTGTTGTCTCTAATGACTTTGACAGCCATGGTGATCAACAAAGTCACCACTCTAGGAAGGATTCGCATCAGTTACCTTTGAATGATCGCTTCCGAGGCAGAATAAAACTTCCAGCAAGTGGTGCCGACGATAACCCAGAGAGGGAATCAGACAGAGGAAGAATTAGGAGCAGATTATCAACTGGAAGGTTGCCAACCCCGCACCAAGGAAGGCTCCAAGACAGAATTAGAGGAAGGGTGCAGGATGATGAGAGGAGAAATTTCAGGGAACGATCAATAGGGAGAGAAGTAATGGGGGACAGAAGTGATTTTTCCGGACCCAAAAGCCTTGCTGAACTTAAGAATGGGAGGAGCTCTGATTATAAGGAGCATCAATCACTGGGAAAGAGGAAGAGTCTAAGGGAACAGTCACAATCAGAAGGTGATTTTCAGTTTGATGGTCCAAAACCTCTGAGTGAAATTCTGAAGGAGAAGAGAAGAGTTGGAGCTGGTGTATCCTCACAGAGTGAAATTGTTCATAGCTCTGATGATACAGCTGTCACAAACATGCAAAATGGAGCATTGCCTGAGGCCAAGGAAGGTGCCAAGAACCACTCACTAATTAATGAAGAAGAAACCAAGCTTCAGGACACTGATACAGCTGGAAGGGAGATAGATAATAATGAGGGGAATCGTGATCAGTCGTATGAGGATGGAATGATCTATGATGAAGCCGCAGAGGAACAGGAGTATGAAGGCGATGATCAGAGGGATGGAGAGTATGATTATGAGCAAGTTGACGAGGGGGAATATGATTATGAACAAGTTGATGAGGGAGAAAATCCAGAGCAAGAATACATGGAGGATGAAGATGGGGATGACTTTGCTAAGAAGATTGGTGTGATGACTACATAA 2112 0.4531 MVAQHPQPQPQPQPQPQPQPQQPPSSAQDEALKRNTDCVYFLASPLTCKKGNECEYRHSEYARVNPRDCWYWLNGNCLNPKCAFRHPPLDGLLGSPAATAAGPSVPSSQIAATPAAPAGPYNSTKQAVPCIFFQKGLCLKGDRCAFLHGPNPTAGNKAVNQVPVSNQGTETPNLKKPFGSRDKNAQERRSSQGNIPKLVGGLEIKPSPKVETAPQRNNFELLKEKHVAPPPAGFDDEASRFKMRSISPVANGPTAARSNRLHQVRMPDDNSFHNGKDSDEFLRESSPGFDVLVADELRNSDYYHGEDEFGNARGPDERNLDSLNDYDLGHSADYGLARDIDQERFRVPQSYDSYDHMQEPYAWEQHRKAPGHLERRSHRRSDSPDNVEVSDLRHRLSKRRRVNGLKSVVSNDFDSHGDQQSHHSRKDSHQLPLNDRFRGRIKLPASGADDNPERESDRGRIRSRLSTGRLPTPHQGRLQDRIRGRVQDDERRNFRERSIGREVMGDRSDFSGPKSLAELKNGRSSDYKEHQSLGKRKSLREQSQSEGDFQFDGPKPLSEILKEKRRVGAGVSSQSEIVHSSDDTAVTNMQNGALPEAKEGAKNHSLINEEETKLQDTDTAGREIDNNEGNRDQSYEDGMIYDEAAEEQEYEGDDQRDGEYDYEQVDEGEYDYEQVDEGENPEQEYMEDEDGDDFAKKIGVMTT* 704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g5419 703 MobiDBLite consensus disorder prediction 1 30 - -
Amo13g5419 703 PANTHER ZN-FINGER, C-X8-C-X5-C-X3-H TYPE-CONTAINING 17 702 - -
Amo13g5419 703 PANTHER ZINC FINGER CCCH-TYPE-CONTAINING 11A 17 702 - -
Amo13g5419 703 SUPERFAMILY CCCH zinc finger 125 149 IPR036855 GO:0046872
Amo13g5419 703 MobiDBLite consensus disorder prediction 476 508 - -
Amo13g5419 703 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 128 150 IPR000571 GO:0046872
Amo13g5419 703 MobiDBLite consensus disorder prediction 157 174 - -
Amo13g5419 703 Pfam Zinc-finger containing family 33 87 IPR041686 -
Amo13g5419 703 MobiDBLite consensus disorder prediction 7 23 - -
Amo13g5419 703 Gene3D - 24 89 - -
Amo13g5419 703 Gene3D - 120 183 - -
Amo13g5419 703 MobiDBLite consensus disorder prediction 447 464 - -
Amo13g5419 703 MobiDBLite consensus disorder prediction 416 436 - -
Amo13g5419 703 MobiDBLite consensus disorder prediction 639 689 - -
Amo13g5419 703 ProSiteProfiles Zinc finger C3H1-type profile. 32 61 IPR000571 GO:0046872
Amo13g5419 703 MobiDBLite consensus disorder prediction 602 638 - -
Amo13g5419 703 ProSiteProfiles Zinc finger C3H1-type profile. 63 89 IPR000571 GO:0046872
Amo13g5419 703 MobiDBLite consensus disorder prediction 573 591 - -
Amo13g5419 703 SMART c3hfinal6 124 150 IPR000571 GO:0046872
Amo13g5419 703 SMART c3hfinal6 65 88 IPR000571 GO:0046872
Amo13g5419 703 SMART c3hfinal6 33 60 IPR000571 GO:0046872
Amo13g5419 703 MobiDBLite consensus disorder prediction 367 703 - -
Amo13g5419 703 MobiDBLite consensus disorder prediction 521 543 - -
Amo13g5419 703 ProSiteProfiles Zinc finger C3H1-type profile. 124 151 IPR000571 GO:0046872
Amo13g5419 703 MobiDBLite consensus disorder prediction 157 210 - -
Amo13g5419 703 MobiDBLite consensus disorder prediction 367 395 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g5419 Amo-Chr13 155076645 155080253 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Amo13g5419 zf-CCCH_3 7.7e-12 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g5419 - - gmx:100787836 928.317