Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g5408 ATGTCTGTGGCTGCTCCAAGTTCCCTTTTGAAGGTGGAGGAGATACAAGGAAGAGGGAGGGGAATGGTTGCATCACAACCTCTTAAAGCCGGCCAAATTGTCCTTAGAGATTCTCCTATCCTGCTCTATTCTGCTTTGCCATTGATCCCGCAGTCTTTATCTTCGTCCTCCTCTACCCTAGCCTCCTCCTTCTGTGATCACTGCTTTAGAACCTTACCATCCTCTTTACAGGGCGATTCTTCATCTTCCGCAGTTTTGTGCCCTTCATGTAGACATTATCGTTTTTGCAGCTCTAATTGTCTCTCAAAGGCATTGAATTCATCTCATTCTTCTTGGGTATGTCAAGCATTGTCTCACTTCCAAGCCAACTCTCCTCTTCTTGGACATCCCCTTGAGCTTCAAGTCCAGGCTCAATTTCTCATTGCTGCGTACAATCTTGCCAATATCTCCCCCTCAGACTTTCAAATCTTGCTTTCTCTTCATGGTTCTCCTGATGACGCTACAATTTCTGCAGCTCAATTCCTACACCCTCTTATTTCATCCCTCTGCTCAATTGCTCCCATTGGTCTTCAGAATGTATTTTCTTTGGAACTCACCTCTGCGCTTCTGGCCAAGGACAAGCACAATGCCTTTGGCTTAATGCAGCCTGTTTCTGTTGATGATGGCCAGAGGTCTGTTAGAGCTTATGGTATATACCCCTATGCCTCCTTTTTTAACCACGATTGCCTTCCCAATGCCTGCAGATTTGATTATGTGGATAGTAATCCACCAGATGGCAGTAATAATACTGACATTATTGTTAGGATGATTCATGATGTTCCTCAAGGCAGGGAGATCTGTTTGAGCTATTTCCCTGTCAATGAAAACTATGCTAGCAGGCAGAAGAGATTGATGGAAGACTATGGCTTCACCTGTAATTGTGATCGGTGTAATGTCGAATCAAATTGGTCAGATAATGATGACACTATCGAAGAAGATAATGCAGAGGATGGAGAAGAGGTTATGGATGAGGAGGACCAATATGAAAACATGGCAGCGTCAGATACAGACAATAATAATGATTTCCCACACGCATATTTCTTTTTAAGGTACATGTGTGATAGACCAAATTGCGGGGGAACTTTGGCTCCTCTACCCCCACAAGTTGATAGTCCATCTAATGTCATGGAATGTAATGTCTGTGGCAAATTGAAAAGTGATGATGAGCAAGATGAAGCTCCCATGGAGGACTGA 1233 0.4371 MSVAAPSSLLKVEEIQGRGRGMVASQPLKAGQIVLRDSPILLYSALPLIPQSLSSSSSTLASSFCDHCFRTLPSSLQGDSSSSAVLCPSCRHYRFCSSNCLSKALNSSHSSWVCQALSHFQANSPLLGHPLELQVQAQFLIAAYNLANISPSDFQILLSLHGSPDDATISAAQFLHPLISSLCSIAPIGLQNVFSLELTSALLAKDKHNAFGLMQPVSVDDGQRSVRAYGIYPYASFFNHDCLPNACRFDYVDSNPPDGSNNTDIIVRMIHDVPQGREICLSYFPVNENYASRQKRLMEDYGFTCNCDRCNVESNWSDNDDTIEEDNAEDGEEVMDEEDQYENMAASDTDNNNDFPHAYFFLRYMCDRPNCGGTLAPLPPQVDSPSNVMECNVCGKLKSDDEQDEAPMED* 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g5408 410 Pfam SET domain 19 283 IPR001214 GO:0005515
Amo13g5408 410 Gene3D - 64 123 - -
Amo13g5408 410 SUPERFAMILY SET domain 8 306 IPR046341 -
Amo13g5408 410 Gene3D - 124 210 - -
Amo13g5408 410 Gene3D SET domain 21 310 IPR046341 -
Amo13g5408 410 ProSiteProfiles SET domain profile. 8 284 IPR001214 GO:0005515
Amo13g5408 410 CDD SET_SMYD 208 310 - -
Amo13g5408 410 SMART set_7 8 290 IPR001214 GO:0005515
Amo13g5408 410 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ASHR2 2 405 IPR044238 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g5408 Amo-Chr13 154747852 154750469 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Amo13g5408 SET 4e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g5408 - - gmx:100783406 654.055