Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g5374 ATGAGGAGGGTTTCAAGTGCTGTGATGATCCTCTTGTGGTTGTTTTCTTCCACCATGATCATAGGAAACTCATCATCATTGCACAGTGAAACCACTCTCAGAGTGCTTTTGGAAGTGAAGAAATCTTTCCAGCAAGACCCAGAAAACGTTCTGAGTGATTGGTCAGAGGAAAACAAAGATTATTGCAGTTGGAGAGGAGTAACGTGCGGATCATCCATTAACTCTAAGTCGGAATTGCAAGTGGTGAGTCTCAACCTTTCTGACTCGTCGCTCACCGGGTCAATATCACACTCACTCGCTCTCTTACAAAACCTGCACCACCTTGATCTCTCTTCCAACAACCTCAACGGTCCCATTCCACCTAATCTCTCTAACCTCACTTCATTGGAATCTTTGCTTCTCTTCTCTAACCAACTCACAGGTCATGTCCCCACTGAGTTGGGCTTGCTCACCAATCTCCGAGTCATGCGACTCGGTGACAACGAACTAACGGGCATCATTCCCGCCTCTCTTGGAAACCTCGTCAACTTGGTCATCCTTGGTTTGGCTACCTGCAGACTCACCGGGTCGATTCCACCGCAACTCGGCCAACTCAGCAATATGGAGAATCTGATACTTAAGGACAACGAGTTAATGGGACCGATTCCGGCCGAGTTGGGAAACTGCACGAGCCTCACTGTCTTCACCGCAGCTAACAACAAGCTCAACGGGTCAATCCCGAGTGAACTGAGTCAACTCAAGACCCTTCAGATTCTCAACCTCGCCAACAACACCTTGTCAGGGGAGATACCGAGTCAACTCGGTGAGATGAGTGAACTCGTTTACCTCAATTTCTTGGGGAACCAACTCGAGGGTGCTATTCCACCATCGTTATCTCAACTGGGGAACCTTCAAACTCTCGACTTGTCAATGAACAAGCTCAGTGGCGGAATCCCAGAAGAATTGGGGAACATGCGTGAGCTATCTTTTTTGGTTCTTTCTGGCAACAACAATCTTAGTGGTGTCATTCCAACAAACATATGTTCCAACGCAACAAAGTTGGAGCATATGTTTCTGTCAGATATTGGAATTCATGGTGAGATTCCATCTTCATTGGGCCAATGCCAGTCACTGAAACAACTTGACTTGTCCAACAACTCACTCAATGGGTCCATTCCCATTGAAATTTATGGATTGCTGTGGTTAACTGATCTCTTGCTCCACAACAACACGTTGGTTGGTTCAGTTTCTCCCTCAATTGGAAACCTCAGTAGCTTGCAGATACTTGCATTGTTCCACAACAATTTGCATGGTCCTCTGCCTGAAGAGATTGGGATGCTTCGGGAGTTGGAAATCTTGTATCTTTATGATAATCAATTGTCAGGGGATATACCCATGGAGATTGGGAACTGTTCCAGCTTGCAAATGATTGATCTCTATGGGAATAATTTCAGTGGTGAAATTCCAAAATCCATTGGAAGGCTGAAAAAATTGAATTTCCTTCACCTAAGGCAGAATGGACTTGTTGGTGAAATTCCTGCCACACTTGGTAACTGTCATAAGCTGAATATTCTGGATTTAGCAGATAATCAACTCTCAGGTGGAATCCCTGCAACACTTGGATACCTCAAGTCATTGGAACAGTTGATGCTCTACAACAATTCTCTTGAAGGTAACCTCCCTCACCAACTCACAAATGTAGCAAACTTGACCAGAGTGAATCTTTCTAAGAACAGACTGAATGGTAGTATGACTGCATTGTGTAGCTCTAGATCGTTTCTTTCCTTCGATGTCACGAACAATGCCTTTGATGGTGAAATTCCTCCCCAATTAGGAAATTCACCCTCACTTGAGAGGCTAAGATTAGGTAACAATAGATTTTCTGGTGAAGTTCCAAGGACATTGGGAAAGCTCCATGAGTTGACACTGTTAGACCTCTCAGGGAATGCACTCACTGGACCAATACCAGATGAGCTCTCTTTATGCAACAGACTGTCTCAAATTCATTTACACAATAATTCTATGTCTGGCCAAATACCAACTTGGGTTGGAAGTTTGCCTCAGCTTGCGAAGCTTATCCTTTCCTTCAATAATTTTTCTGGACCAATTCCATTAGGCTTATTCAGATGTTCCAAATTGCTGGTTCTTGACCTGAATGACAATTCTCTCAATGCTAGTCTCCCAGCTGAAGTTGGTGATCTTGCATCCCTTAACGTTCTCAGACTTGGCCGTAATAAGTTATCTGGACCGATCCCTGCAGCAATAGGCAAGTTGAGCAAGCTTTATGAGCTGCAGCTATCTAATAATAGCTTCAATGGTGAGATTCCAACAGAAATTGGAAAACTCCAAAATCTCCAGACCAGTTTAGACCTCAGTTACAACAATCTCTCAGGTGAAATCCCAGCTTCTCTTGGGAATCTGTTGAAATTAGAAGCACTTGATCTTTCCCACAATCAACTCACTGGAGAAGTCCCTCCACAAGTTGGTGACATGAGCAGCTTGGGAGTGCTTGATCTCTCCTACAACAACCTTCAAGGAAAATTGGACAGGAAATTCTCTCATTGGCCGGACGAGGCATTTGAAGGGAACCAACAGCTTTGTGGAAGCCCTCTTGATCACTGCAACAGTGATGATGCTTCCAGCAGAGATCAATCAGGCCTAAATGCACCATCAGTAGTGGTAATATCTGCCATTTCAACTCTAGTTGCAATTGCGCTATTTATACTTGCATTCAGAGCCTTCTTCAGAAACAAACCAGAACATTTTAAGAGAGACAGTGAAGCGAATTATGTGTACTCCTCCTCTTCATCACAAGCACAGCGAAGGCCGCTGTTTCAACTCAACCCTGCTGGAAATCGAGATTTCAGGTGGGAAGATATCATGGATGCAACAAACAATCTAAGCGATGAATTCAAGATTGGTTCAGGGGGGTCAGGGACAATCTACAAAGCTGAATTGGCCAATGGAGATACAGTGGCTGTCAAGAAGATTTCAGCGAAAGATGATTTTCTGCTGAACAAAAGCTTCATTAGAGAAGTTAAGACACTTGGGAGGACAAGGCACAGGCATCTTGTGAAGCTTATAGGTTACTGTGGCAATAATGCAAACAAAGGAGCAGCTTGGAATCTGTTGATATATGAGTATATGGAGAATGGGAGTGTATGGGATTGGCTTCATGGGAAACCAGCTATGGCCAGCAAAGTGAAGAGGAGCCTTGATTGGGAGACAAGGTTCAGAATTGCAGTGGGACTAGCTCAAGGAGTGGAGTACCTCCACCATGATTGTGTGCCAAAGATCATTCACAGGGATATCAAATCCAGCAACATATTGCTAGATTCCAAAATGGAAGCACACTTGGGAGATTTTGGACTTGCAAAAGCAATCTTCGAGAATTATGACTCCAGAACCGAGTCTAATTCTCTGTTTGCAGGATCTTACGGCTACATGGCTCCAGAGTACGCATACTCCCTACGTGCAACAGAAAAGAGTGATGTTTACAGCATGGGAATTGTGCTTATGGAGCTTGTTAGTGGTAAAACGCCAACAGATGAAACTTTTGGAGCAGAGATGGATATGGTGAGATGGGTGGAGATGCACATGGATATGCATGGCGCTGCACGCGAGGAGGTGATAGATCCTGAGCTGAAACCTCTGTTGCCTGCTGAAGAGTTTGCGGCATTCCAAGTGCTTGAGGTAGCATTGCAGTGCACCAAAACTACACCACAGGAGAGGCCATCCTCCCGGAAAGTATGTGATCTTCTCCTCCATGTATTCAACAACAGAATGGCCCAGTTTGATAAGATGAATTTGGATCAGTACAAATTCAAGTGA 3810 0.4444 MRRVSSAVMILLWLFSSTMIIGNSSSLHSETTLRVLLEVKKSFQQDPENVLSDWSEENKDYCSWRGVTCGSSINSKSELQVVSLNLSDSSLTGSISHSLALLQNLHHLDLSSNNLNGPIPPNLSNLTSLESLLLFSNQLTGHVPTELGLLTNLRVMRLGDNELTGIIPASLGNLVNLVILGLATCRLTGSIPPQLGQLSNMENLILKDNELMGPIPAELGNCTSLTVFTAANNKLNGSIPSELSQLKTLQILNLANNTLSGEIPSQLGEMSELVYLNFLGNQLEGAIPPSLSQLGNLQTLDLSMNKLSGGIPEELGNMRELSFLVLSGNNNLSGVIPTNICSNATKLEHMFLSDIGIHGEIPSSLGQCQSLKQLDLSNNSLNGSIPIEIYGLLWLTDLLLHNNTLVGSVSPSIGNLSSLQILALFHNNLHGPLPEEIGMLRELEILYLYDNQLSGDIPMEIGNCSSLQMIDLYGNNFSGEIPKSIGRLKKLNFLHLRQNGLVGEIPATLGNCHKLNILDLADNQLSGGIPATLGYLKSLEQLMLYNNSLEGNLPHQLTNVANLTRVNLSKNRLNGSMTALCSSRSFLSFDVTNNAFDGEIPPQLGNSPSLERLRLGNNRFSGEVPRTLGKLHELTLLDLSGNALTGPIPDELSLCNRLSQIHLHNNSMSGQIPTWVGSLPQLAKLILSFNNFSGPIPLGLFRCSKLLVLDLNDNSLNASLPAEVGDLASLNVLRLGRNKLSGPIPAAIGKLSKLYELQLSNNSFNGEIPTEIGKLQNLQTSLDLSYNNLSGEIPASLGNLLKLEALDLSHNQLTGEVPPQVGDMSSLGVLDLSYNNLQGKLDRKFSHWPDEAFEGNQQLCGSPLDHCNSDDASSRDQSGLNAPSVVVISAISTLVAIALFILAFRAFFRNKPEHFKRDSEANYVYSSSSSQAQRRPLFQLNPAGNRDFRWEDIMDATNNLSDEFKIGSGGSGTIYKAELANGDTVAVKKISAKDDFLLNKSFIREVKTLGRTRHRHLVKLIGYCGNNANKGAAWNLLIYEYMENGSVWDWLHGKPAMASKVKRSLDWETRFRIAVGLAQGVEYLHHDCVPKIIHRDIKSSNILLDSKMEAHLGDFGLAKAIFENYDSRTESNSLFAGSYGYMAPEYAYSLRATEKSDVYSMGIVLMELVSGKTPTDETFGAEMDMVRWVEMHMDMHGAAREEVIDPELKPLLPAEEFAAFQVLEVALQCTKTTPQERPSSRKVCDLLLHVFNNRMAQFDKMNLDQYKFK* 1270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g5374 1269 Gene3D Ribonuclease Inhibitor 483 580 IPR032675 -
Amo13g5374 1269 SUPERFAMILY Protein kinase-like (PK-like) 942 1247 IPR011009 -
Amo13g5374 1269 Gene3D Phosphorylase Kinase; domain 1 920 1041 - -
Amo13g5374 1269 Pfam Leucine Rich Repeat 104 126 IPR001611 GO:0005515
Amo13g5374 1269 Pfam Protein kinase domain 964 1244 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo13g5374 1269 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1092 1104 IPR008271 GO:0004672|GO:0006468
Amo13g5374 1269 Gene3D Ribonuclease Inhibitor 581 876 IPR032675 -
Amo13g5374 1269 PRINTS Leucine-rich repeat signature 800 813 - -
Amo13g5374 1269 PRINTS Leucine-rich repeat signature 371 384 - -
Amo13g5374 1269 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE GSO1 4 1264 - -
Amo13g5374 1269 SUPERFAMILY L domain-like 44 406 - -
Amo13g5374 1269 Gene3D Transferase(Phosphotransferase) domain 1 1042 1267 - -
Amo13g5374 1269 SUPERFAMILY RNI-like 582 839 - -
Amo13g5374 1269 Gene3D Ribonuclease Inhibitor 29 185 IPR032675 -
Amo13g5374 1269 Gene3D Ribonuclease Inhibitor 289 389 IPR032675 -
Amo13g5374 1269 ProSitePatterns Protein kinases ATP-binding region signature. 966 989 IPR017441 GO:0005524
Amo13g5374 1269 SUPERFAMILY L domain-like 342 669 - -
Amo13g5374 1269 ProSiteProfiles Leucine-rich repeat profile. 104 127 IPR001611 GO:0005515
Amo13g5374 1269 Gene3D Ribonuclease Inhibitor 390 482 IPR032675 -
Amo13g5374 1269 Pfam Leucine rich repeat N-terminal domain 34 69 IPR013210 -
Amo13g5374 1269 Pfam Leucine rich repeat 753 813 IPR001611 GO:0005515
Amo13g5374 1269 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 4 1264 - -
Amo13g5374 1269 Gene3D Ribonuclease Inhibitor 186 288 IPR032675 -
Amo13g5374 1269 SMART LRR_typ_2 440 464 IPR003591 -
Amo13g5374 1269 SMART LRR_typ_2 150 173 IPR003591 -
Amo13g5374 1269 SMART LRR_typ_2 800 823 IPR003591 -
Amo13g5374 1269 SMART LRR_typ_2 751 775 IPR003591 -
Amo13g5374 1269 SMART LRR_typ_2 488 512 IPR003591 -
Amo13g5374 1269 SMART LRR_typ_2 631 655 IPR003591 -
Amo13g5374 1269 SMART LRR_typ_2 824 855 IPR003591 -
Amo13g5374 1269 SMART LRR_typ_2 246 270 IPR003591 -
Amo13g5374 1269 SMART LRR_typ_2 294 318 IPR003591 -
Amo13g5374 1269 SMART LRR_typ_2 368 392 IPR003591 -
Amo13g5374 1269 SMART LRR_typ_2 536 560 IPR003591 -
Amo13g5374 1269 SMART LRR_typ_2 704 727 IPR003591 -
Amo13g5374 1269 SMART LRR_typ_2 102 126 IPR003591 -
Amo13g5374 1269 SMART LRR_typ_2 174 198 IPR003591 -
Amo13g5374 1269 SMART LRR_typ_2 679 703 IPR003591 -
Amo13g5374 1269 SMART serkin_6 960 1252 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo13g5374 1269 ProSiteProfiles Protein kinase domain profile. 960 1252 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g5374 Amo-Chr13 154078165 154082652 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g5374 27 1250 Receptor kinase-like Gene Family AT5G07280 36.133 0.0 604
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Amo13g5374 Pkinase 8.2e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g5374 - - gmx:100801889 1905.57