Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g5368 TTTGCCTTTTTTAGTACCACAATCCTTCCTACCTCCCTCCCTATACCTTGTCCACCTGAAACAACTCATCTGCAATATTATCTTGGTTATTTTACCTTCTACTACTGTAGACAAAAACCAATGAGTTGTGGAGACAGGCCAAATATGCATGAGCAACCTGGTTGCTTTGATCCCAACACAATGGCAGAAGGTGTCAGTACTCCAAAACTAAAAGATACCTTTCCTCAAACACTCTCAGACCCATCATCATCACCATCACCACTTATTGTTGTAGGCAACACTACAAACAGCAACAATAACCTTGAAGAGAATATCAGACTTTCTATGGAGGAGTTATCCTATCACCACCAGCAAGAAGATGTCTCCAACTATGTAAATGGAGTCACTGCCACAACCATAGATATCCCACATCCACAGCATCTTGGTTTGAATATGGGTAACTCCTACAACAACAATATCAACATGGATTCCCATTTGGTTCAGCATGAAATTGATATCCTTCCCTATCAGCAACCCACTTGGGATCCCAATGTTCAGGAAATGCAAGATATGGGTTATACTAATCACTCAGAACACCAACCACATGATCAGCAATTTCAGCAAACTGAGGCACAGAACTGCAGCCAAAGTTACAATCCCTCCTCCATTTTGGACCCGCCTTACCCTTCACAAGATCTCCTAAACCTTCTTCACTTGCCAAGATGTTCAACTTCGTCTTTGCTTGCCAACCCTGCTATCTGCATCGCAAACAAGACACAGAATTTTCAGAATCCGATGGGATTTCTTGGGGACCTTCCAATAGGATCAGACAACACAAGTGCATCCTCAGTATTGTATGATCCTCTACTCCATTTGAACCTGCCTCCACAGCCTCCAGCCCTCAGAGAGCTGTTTCAGTCTCTTCCCCGTGGCTACAGCTTGCCAACGAACTCAAGAAGTGGTTCTCTTTTCGGTGGAGGGGATGAGATTGAAGGAGATGGAAGCCAACTTGACATGGGAGTGCTCGACTTCAACAGGGTCACAGCTTCAGTGGGCAAAGGAAGGGAAGGAAAAGGCACCAAACACTTTGCAACTGAGAAACAAAGAAGAGAGCAACTGAATGGCAAATACAAAATCCTGAGGAGTCTTATCCCAAGCCCCACAAAGATGGATAGAGCCTCTGTGGTGGGTGATGCCATTGAATATATAAGGGAGCTTCTCAGAACGGTCAATGAGCTCAAATTATTGGTGGAGAAGAAAAGATATGGAAGGGAGAGATGCAAAAGGCAGAAAGCGGAAGATGATGCTGCAGAGAGCTGCAATATAAAGCCTTTCAGTGATCCAGATGGATGCATAAGGACCTCATGGCTTCAAAGGAAATCAAAAGATAGCGAGGTTGATGTGCGAATTGTTGATGATGATGTTACAATCAAACTCTTCCAGAGGAAGAAGATTAACTGTCTGCTTTCAGTCGCCAAGGTTCTGGATGAACTTCAGTTGGAACTTCACCATGTTGCAGGTGGACATGTTGGCGAATATTGCAGTTTCTTGTTCAATAGCAAGATAATAGAAGGTTCTTCAGTCTATGCCAGTGCTATAGCCAACAGGGTGATCGATGTTATGGACACTCAGTATGCAGCAGCAGTTCCACATACAAGTAGCTATTAG 1647 0.439 FAFFSTTILPTSLPIPCPPETTHLQYYLGYFTFYYCRQKPMSCGDRPNMHEQPGCFDPNTMAEGVSTPKLKDTFPQTLSDPSSSPSPLIVVGNTTNSNNNLEENIRLSMEELSYHHQQEDVSNYVNGVTATTIDIPHPQHLGLNMGNSYNNNINMDSHLVQHEIDILPYQQPTWDPNVQEMQDMGYTNHSEHQPHDQQFQQTEAQNCSQSYNPSSILDPPYPSQDLLNLLHLPRCSTSSLLANPAICIANKTQNFQNPMGFLGDLPIGSDNTSASSVLYDPLLHLNLPPQPPALRELFQSLPRGYSLPTNSRSGSLFGGGDEIEGDGSQLDMGVLDFNRVTASVGKGREGKGTKHFATEKQRREQLNGKYKILRSLIPSPTKMDRASVVGDAIEYIRELLRTVNELKLLVEKKRYGRERCKRQKAEDDAAESCNIKPFSDPDGCIRTSWLQRKSKDSEVDVRIVDDDVTIKLFQRKKINCLLSVAKVLDELQLELHHVAGGHVGEYCSFLFNSKIIEGSSVYASAIANRVIDVMDTQYAAAVPHTSSY* 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g5368 548 CDD bHLH_AtMYC1_like 355 419 IPR045896 -
Amo13g5368 548 MobiDBLite consensus disorder prediction 66 87 - -
Amo13g5368 548 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 351 417 IPR036638 GO:0046983
Amo13g5368 548 MobiDBLite consensus disorder prediction 70 87 - -
Amo13g5368 548 PANTHER TRANSCRIPTION FACTOR BHLH91 49 546 IPR045895 GO:0006355|GO:0048658
Amo13g5368 548 PANTHER TRANSCRIPTION FACTOR BHLH91 49 546 - -
Amo13g5368 548 Pfam Helix-loop-helix DNA-binding domain 353 399 IPR011598 GO:0046983
Amo13g5368 548 MobiDBLite consensus disorder prediction 187 211 - -
Amo13g5368 548 Gene3D - 347 424 IPR036638 GO:0046983
Amo13g5368 548 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 350 399 IPR011598 GO:0046983
Amo13g5368 548 SMART finulus 356 405 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g5368 Amo-Chr13 153913882 153916290 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g5368 49 546 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G31210 35.793 3.37e-87 274
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Amo13g5368 HLH 4.8e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g5368 - - gmx:100782512 772.311