Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g5358 ATGAACATGATGCTGGCTTCGTTCCCTGTATACCCAAAACCCTTTGCAAGCGTTAGAGCAGAATTCCACACACAGCAATCTTCTTTTCTCAAGTTCGCACCTCATTCCTATCCTCTTGCAAGCAAAATCCTTGTTAAGAATTTGCCATATAATACTGGTGAGACTACTTTGCAAAAGGAATTTTCGAATTTTGGCAAGATAGCTGAAGTTAAGGTTGCTAAAGATGTAAAAACGAAAAGATCAAAAGGATATGCTTTTATTCAATACATGTGTCAAGATGACGCCATGCTTGCGCTAGAAACAATGGATCAGAAGGATTTTTATGGTAGGACGATTCATGTAGAAATTGCAAAGCTTGGCTGGGATGATTATGGTGCACGGCCAAGGACCTCAGGGCCCCAAAAGAAATGGAATTTGCCAGAGCCAGAGCAAGAGGAGGTGGTAGATTGCTGGTACTGA 459 0.4161 MNMMLASFPVYPKPFASVRAEFHTQQSSFLKFAPHSYPLASKILVKNLPYNTGETTLQKEFSNFGKIAEVKVAKDVKTKRSKGYAFIQYMCQDDAMLALETMDQKDFYGRTIHVEIAKLGWDDYGARPRTSGPQKKWNLPEPEQEEVVDCWY* 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g5358 152 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 41 119 IPR000504 GO:0003723
Amo13g5358 152 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN 70 KD 21 150 - -
Amo13g5358 152 CDD RRM3_RBM19_RRM2_MRD1 42 114 - -
Amo13g5358 152 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 43 113 IPR000504 GO:0003723
Amo13g5358 152 SUPERFAMILY RNA-binding domain, RBD 41 127 IPR035979 GO:0003676
Amo13g5358 152 Gene3D - 21 144 IPR012677 -
Amo13g5358 152 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN 4, MITOCHONDRIAL ISOFORM X1 21 150 - -
Amo13g5358 152 SMART rrm1_1 42 115 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g5358 Amo-Chr13 153798490 153800502 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g5358 5 114 Eukaryotic Initiation Factors Gene Family AT4G34110 30.000 2.52e-08 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g5358 - - gmx:100305971 223.402
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g5358 13 153798490 153800502 Amo13g5358 13 153798490 153800502 ECH