Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g5330 ATGGCGGGAAGGGCTAAACGGAAAACCTCTGCTTCTGCTTCACCCTCTTCTTCTGTTCCTTCCCGCAAACTAGTGTTGAACATCAAAACAAGCAGGGGGATGAAGAGATCACTGCGGCAGGCTAATTCGAGAAAGAAACCCAAAGCAAAACAAAAGATTGATGCTAAGAAGCCAAAGAAACCTCCCACTGCTTTCTTCTACTTCTTGGAGGATTTTCGTAAAGAATTTCAAGAGCAGAACCCCGATGTCAAGTCAATGCGAGATATTGGCAAGGCATGTGGAGAGAAGTGGAAAACGATGACTTATGAGGAGAAGGTTCAATACTATGATATAGCAACAGAAAAGCGCGCAGAATTTGATATGGCAATGGCAGAATATAATAAGAAAATGGTAATAATCTATTATGTTAATGGTATTGAACTGACTCTTGTTTACCTTGTTATGAAAGAAACAGTTCGTTTTGTTTTGTTGATGATTGGCAGGAAAACGGTGAATTTGAAGACACTGATGAAGAATCGGATTTTGATGAATAAGACCCATGTAATTATTATTAGTTAG 558 0.3925 MAGRAKRKTSASASPSSSVPSRKLVLNIKTSRGMKRSLRQANSRKKPKAKQKIDAKKPKKPPTAFFYFLEDFRKEFQEQNPDVKSMRDIGKACGEKWKTMTYEEKVQYYDIATEKRAEFDMAMAEYNKKMVIIYYVNGIELTLVYLVMKETVRFVLLMIGRKTVNLKTLMKNRILMNKTHVIIIS* 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g5330 185 CDD HMGB-UBF_HMG-box 58 124 - -
Amo13g5330 185 SMART hmgende2 57 128 IPR009071 -
Amo13g5330 185 MobiDBLite consensus disorder prediction 38 55 - -
Amo13g5330 185 MobiDBLite consensus disorder prediction 1 59 - -
Amo13g5330 185 SUPERFAMILY HMG-box 45 131 IPR036910 -
Amo13g5330 185 Pfam HMG (high mobility group) box 58 127 IPR009071 -
Amo13g5330 185 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 58 127 IPR009071 -
Amo13g5330 185 MobiDBLite consensus disorder prediction 9 25 - -
Amo13g5330 185 PANTHER HIGH MOBILITY GROUP B PROTEIN 14 7 130 - -
Amo13g5330 185 Gene3D High mobility group box domain 41 132 IPR036910 -
Amo13g5330 185 PANTHER HIGH MOBILITY GROUP B PROTEIN 12-RELATED 7 130 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g5330 Amo-Chr13 153424811 153427617 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Amo13g5330 HMG_box 6.8e-18 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g5330 - - gmx:100809401 174.096