Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Amo13g5327 | ATGGACTTGAACGAAGAAGTCAGGGCAGCTCACAAGCGAGAATTCGCCGATTTCTTGGACCAAGATGGAATTTACATGGACGAGATCAAAGCGCTCATCAATCACAAGCGCCGCCGCCTCATCGTCAACATCTCCGATCTTCACAGCTTCCGCGACTTGGGTAACAGGATTCTGAGGAATCCGAGCGAGTATATGCAAGCTTTCTGTGATGCGGTGACTGATGCTGCTCGTGCTATTGATCCCAAGTATTTAAAGGAAGGGGAACAGGTGCTTGTGGGTTTTGAAGGACCTTTCGTTTCTCGCCGAGTCACGCCAAGAGAGCTTCTCTCTGAATTCATTGGTTCTATGGTTTGCGTTGAGGGTATTGTCACCAAATGTTCGCTTGTAAGGCCAAAGGTTGTCAAAAGTGTTCATTTCTGCCCCACCACTAGACAATTCACCAGTCGAGAATATCGTGATATTACATCCAACATGGGCTTGCCCACAGGGTCTGTTTATCCTACAAGGGATGAAAGAGGCAACTTGCTGGTGACTGAGTACGGGTTGTGCAAGTACAAAGATCACCAAACCTTGTCCATCCAAGAAGTTCCTGAGAACTCTGCTCCTGGTCAGCTCCCAAGGACCGTGGATGTCATACTAGAGGATGACCTTGTTGATTCTTGCAAGCCTGGAGATCGTGTGGCTGTTGTAGGGATATATAAGGCTCTTCCAGGCAAAACCAAAGGAAGCGTAAATGGAGTATTCAGGACTGTGCTCATAGCCAACAATGTGTCTCTTCTCAACAAAGAGGCTAATGCGCCAATCTACAGTCCTGAAGACCTGAAAAACATAAAGAAGATAGCTGAAAGAGATGATGCATTTGACCTACTTGGTAATTCACTTGCACCTTCTATATATGGGCATTCATGGATTAAGAAGGCTGTGATTTTGTTAATGCTCAGTGGAGTTGAAAAGAACTTAAAGAATGGCACTCACTTGCGAGGTGACATCAACATGATGATGGTTGGTGATCCCTCTGTCGCCAAGTCTCAACTCCTGAGAGCAATTATGAATATTGCTCCTTTGGCCATATCAACTACGGGTAGGGGTTCTTCTGGGGTTGGTTTGACAGCAGCAGTTACTTCAGATCAAGAAACAGGGGAAAGACGCCTGGAAGCTGGGGCAATGGTTCTTGCTGACAGAGGTGTTGTCTGCATTGATGAATTTGACAAGATGAATGATCAAGATCGTGTTGCCATACATGAAGTTATGGAACAACAGACTGTGACTATTGCAAAAGCTGGCATTCATGCATCACTTAATGCACGATGCAGTGTGGTGGCTGCTGCAAATCCCATATATGGAAGTTATGATCGATCACTTACTCCGACAAAAAATATTGGACTTCCAGACTCCTTACTTTCTCGGTTTGATTTACTGTTTATTGTGTTGGATCAAATGGATCCCGATATTGATCGTCATATATCGGAGCATGTCTTGCGTATGCATCGATTTCGACCTGCTACTGATGGAGGTGGGGCAGCACTTGATGGGAGCTCAAGGTATGGAAGAGAAGACGAAGCAGAGACTGAATCGTCTGTGTTTGTAAAATATAACAGAATGCTGCATGGAAAGAAGACTGAAAGGGGTCGCAAACGTGATACTCTCACGATAAAGTTTCTTAAAAAGTATATCCATTATGCTAAGCATAGGATTCAACCTGAACTTTCTGATGAGGCTTCTGAGCAAATTGCCACAGCATATGCTGAGCTCAGAAGTGCCAACTCAAATGCAAAGACTGGAGGAACACTTCCTATAACTGCCAGAACGCTAGAAACTATAATACGTCTCTCAACGGCTCATGCCAAATTGAAGTTGAGCCGGCAGGTTCTTAATTTTGCAATATATCACAAAGAATTAACAGAAATGGAGGAGCGTGAGCTAGAGAGGGAAAAAGAACTTGAGAGAAAGCGTAAGGCGGAACATGATGCTGGTGGAGATGATGGTGCTGATCATGGTCCAAGAACTCGAAGAAGATCTTTGGGATGTTCTATTAGTATTCTTTTTTTATTATATTTCTCTCTGCGTACATGTTTTTTATATTATGTAACTTTGTCTGCATTGACATGTAGAATCGAAGCGTTTAATTCTCTGTTTGGTCAGCACATGCGTGGCAACCGCCTGGATGTTATATCCATTGCAGACTTAGAGACTGTTATCAAAGGAGCTGATTCCAGTTACAGCTCCCAAGATATATTGGACCTACTAAAGAAATTGGAAGATGACAATAGAGTGATGATAGCTGATGGAAGAGTGCATATGATATCATAA | 2310 | 0.4364 | MDLNEEVRAAHKREFADFLDQDGIYMDEIKALINHKRRRLIVNISDLHSFRDLGNRILRNPSEYMQAFCDAVTDAARAIDPKYLKEGEQVLVGFEGPFVSRRVTPRELLSEFIGSMVCVEGIVTKCSLVRPKVVKSVHFCPTTRQFTSREYRDITSNMGLPTGSVYPTRDERGNLLVTEYGLCKYKDHQTLSIQEVPENSAPGQLPRTVDVILEDDLVDSCKPGDRVAVVGIYKALPGKTKGSVNGVFRTVLIANNVSLLNKEANAPIYSPEDLKNIKKIAERDDAFDLLGNSLAPSIYGHSWIKKAVILLMLSGVEKNLKNGTHLRGDINMMMVGDPSVAKSQLLRAIMNIAPLAISTTGRGSSGVGLTAAVTSDQETGERRLEAGAMVLADRGVVCIDEFDKMNDQDRVAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIYGSYDRSLTPTKNIGLPDSLLSRFDLLFIVLDQMDPDIDRHISEHVLRMHRFRPATDGGGAALDGSSRYGREDEAETESSVFVKYNRMLHGKKTERGRKRDTLTIKFLKKYIHYAKHRIQPELSDEASEQIATAYAELRSANSNAKTGGTLPITARTLETIIRLSTAHAKLKLSRQVLNFAIYHKELTEMEERELEREKELERKRKAEHDAGGDDGADHGPRTRRRSLGCSISILFLLYFSLRTCFLYYVTLSALTCRIEAFNSLFGQHMRGNRLDVISIADLETVIKGADSSYSSQDILDLLKKLEDDNRVMIADGRVHMIS* | 770 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Amo13g5327 | 769 | Gene3D | - | 106 | 236 | IPR012340 | - | |
| Amo13g5327 | 769 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 296 | 623 | IPR027417 | - | |
| Amo13g5327 | 769 | CDD | MCM3 | 289 | 623 | - | - | |
| Amo13g5327 | 769 | Pfam | MCM OB domain | 106 | 236 | IPR033762 | - | |
| Amo13g5327 | 769 | MobiDBLite | consensus disorder prediction | 640 | 668 | - | - | |
| Amo13g5327 | 769 | Pfam | MCM P-loop domain | 274 | 496 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Amo13g5327 | 769 | Coils | Coil | 630 | 656 | - | - | |
| Amo13g5327 | 769 | SUPERFAMILY | Nucleic acid-binding proteins | 19 | 256 | IPR012340 | - | |
| Amo13g5327 | 769 | Pfam | MCM N-terminal domain | 12 | 81 | IPR027925 | - | |
| Amo13g5327 | 769 | Gene3D | - | 3 | 96 | - | - | |
| Amo13g5327 | 769 | Coils | Coil | 570 | 590 | - | - | |
| Amo13g5327 | 769 | Pfam | MCM AAA-lid domain | 553 | 624 | IPR041562 | - | |
| Amo13g5327 | 769 | SMART | AAA_5 | 328 | 481 | IPR003593 | - | |
| Amo13g5327 | 769 | SMART | mcm | 101 | 629 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
| Amo13g5327 | 769 | PANTHER | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER | 3 | 761 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
| Amo13g5327 | 769 | PANTHER | DNA HELICASE | 3 | 761 | - | - | |
| Amo13g5327 | 769 | Gene3D | - | 132 | 186 | - | - | |
| Amo13g5327 | 769 | ProSiteProfiles | MCM family domain profile. | 286 | 492 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Amo13g5327 | 769 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 415 | 428 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Amo13g5327 | 769 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 387 | 401 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Amo13g5327 | 769 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 327 | 342 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Amo13g5327 | 769 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 439 | 451 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Amo13g5327 | 769 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 466 | 474 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Amo13g5327 | 769 | ProSitePatterns | MCM family signature. | 395 | 403 | IPR018525 | GO:0003677|GO:0005524|GO:0006260 | |
| Amo13g5327 | 769 | PRINTS | Mini-chromosome maintenance (MCM) protein 3 signature | 178 | 192 | IPR008046 | GO:0003677|GO:0005524|GO:0006270|GO:0042555 | |
| Amo13g5327 | 769 | PRINTS | Mini-chromosome maintenance (MCM) protein 3 signature | 204 | 216 | IPR008046 | GO:0003677|GO:0005524|GO:0006270|GO:0042555 | |
| Amo13g5327 | 769 | PRINTS | Mini-chromosome maintenance (MCM) protein 3 signature | 455 | 465 | IPR008046 | GO:0003677|GO:0005524|GO:0006270|GO:0042555 | |
| Amo13g5327 | 769 | PRINTS | Mini-chromosome maintenance (MCM) protein 3 signature | 616 | 631 | IPR008046 | GO:0003677|GO:0005524|GO:0006270|GO:0042555 | |
| Amo13g5327 | 769 | PRINTS | Mini-chromosome maintenance (MCM) protein 3 signature | 488 | 498 | IPR008046 | GO:0003677|GO:0005524|GO:0006270|GO:0042555 | |
| Amo13g5327 | 769 | Gene3D | - | 268 | 653 | IPR027417 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Amo13g5327 | Amo-Chr13 | 153397763 | 153401946 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Amo13g5327 | 1 | 575 | Core DNA Replication Machinery Family | AT5G46280 | 82.322 | 0.0 | 974 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Amo13g5327 | K02541 | - | jre:108990186 | 1231.47 |