Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g5298 ATGAACAATAAACTTTACTCTTCGCTATGGACATTCTTCACTTACTGTTTTTCATTGCAATTGCACTACTACTTCTTCATGAGCCTCATTGTTAGTGGAACCAACTTCACTACTAGAGATAAGCATGCACTTGTTGCTCTCAAATCTTCCATAACTCAGGACCCTCACCACTTCCTCACACATAATTGGTCCACCAACTCCTCAGTATGCAACTGGTTTGGTGTCACCTGTGATCATCGCCATGGAAGGGTAAGAGCCTTGAATCTTGGTGACATGGGTCTTAGTGGTACCATACCCTCTCATTTGGGGAACCTCTCCTTCCTCATTGAACTCAACCTTGGTGGTAACACTTTCCATCACAACTTGCCACAAGAACTAGTTCATCTTCGAAGATTGAAGTCACTTAACTTGAGCTACAATGAATTTAGTGGTAATGTTCCACAATGGATAGGAGCCTTATCTTCTCTTCAGCACTTGAACCTTAGAAACAATAGGTTTGGTGGTGTTATTCCAAAGTCTATATCAAATTTAACAGTGCTAGAGACCTTGGAAATTGACCACAATCTTATTGAAGGCTCCATTCCAGATGAAGTTGGCAGAATGAGCCAGTTGAGGATCTTATCCATGTCAGTAAACCATCTCTCCGGTGCCATTCCTCCAACTATTTCTAACCTCTCTTCTTTGCGTGGAATCAGTTTGTCTTATAACTCTCTCTCAGGAGGCATTCCAGTGGAGATTGGTGAACTTCCGGAGCTAAGAGTGGTGTATCTTGGAAATAATCCACTTGGTGGATCCATACCAAGAACAATGTTGAATAGTTCAACGCTGCAAGACATTGAGATTGGGTCAAGCAACTTATCTGGGACCCTACCATCAAACTTATGTAGTGGACTTGCAAGAATCCAAGTGCTTTACATAGCTTTCAACCAGCTTTCTGGTAAACTGCCTTCGGTTTGGCACCACTGCAAAGAGTTGACCGATGTTGACTTATCAAACAACAAGTTCAGCCAAGGGAACATACCCCGTGATATTGGAAACTTAACTATGCTTGCTTCCTTGTATCTTAATCAAGCCAACTTACAAGGAGAAATTCCACCCTCTCTTTTTAACATATCTTCAATGAGAGTACTCAACCTTGAACAAAACAAATTGAATGGTAGCCTCACAGAAGAGATGTTTCTTCAGCTTCCTTTACTAGAATACATTTATCTGGTAGATAATCAATTTGTTGGAAGTATTCCAAAAACAATAAGCAACTGCACCATGCTCCAAGAGTTACATTTGGGAAGCAACTACTTCACAGGTTCTATACCAGAGGGCATTGGAGATCTTCTACTCACAAGCTTAAGCATGGGAAATAACCATTTAAGTGGATCAATTCCCTCAAATATCTTCAACATGTCTTCACTGAGTTACTTATATCTAGCAAATAATTCCCTCTCAGGTTCTCTTCCATCACATATCAGCCTTGAAAACATGGAAGAGCTAAACTTGTATGGAAACAAACTTAGTGGAAATATTCCAAGTAGCATATCCAATGCTACAAAGCTTAACTACATGGACTTGAAGTTAAATAAATTCAGTGGTGTTATCCCAAATACTATTGGGAATTTGAGAAATCTTCAGCAGCTTGATTTAGGATACAATAATTTAACCACTCATTCTTCCACTCTTGAATTAATGTATCCTTCTTCCTTGTGCGATCTTTACATATCAGGGAATCCATTCCATGCAAAGCTTCCCAAGTCAATTGGAAATATGTCCAATTTGGAACTATTTGATGCTGATGCTTGCAGTATTGATGGTGAAATCCCTTTGGAAATTGGAAACTTAACCAATTTGTACGCGCTAAATTTGTACCGGAATGATTTAAGTGGAACCATTCCAACTACAATTAATGGTTTGCAGTCTCTTCAATATTTGAGTCTTGGCAACAACCGTCTGCAGGGAACCATCATCAGCGAAATCTGCAAAATCAAGCAGCTGAGTGAGTTGTACATAACTGAGAACAAGCTAATTTCTGGAGAGGTTCCAACTTGCTTTGGTAATCTTACTTCTCTAAGAAAACTTTACTTGAACTCCAACAAACTCAGTAAGGTGCCTTCTTCTCTTTGGAGCCTCAAAGACATTCTTGAGGTGAACTTGTCTGACAATGCTTTAACTCTGTCTCTTCCAATTGAAATTGGGAACTTAAAGGCTGTGACTTTCTTGGATCTATCAAAGAATATGATCTCAGGAAGCATTCCTGGGGCCATTTCTGGATTGCAAAATTTGCAAATTCTCAACTTATCACAAAATAAATTGGTAGGGGGTATTCCTGATTCACTTGGCAGTTTGATAAGTTTGACAGATTTGGACTTATTTCAAAACAACTTGTTTGGCTTGATTCCAAGATCATTGGAGTCACTTCATTATCTTGAATTCATCAATCTTTCTAATAATAGTTTGGAAGGAGAGATTCCGAGTGGTGGACCTTTCGAAAATTTCACTGCTCAATCTTTCATGTTTAATAAAGCACTTTGTGGAAATGCTAGATTACAAGTCCCAGCATGCAGTAAAGTAAAGAAGAAAGGGTCAAATGCAAACATATTCTTCATCAAATGCATATTACCTATAATGGTTTCAATCATTCTGGTTGTTTTCTGTGTGTTTTTTCTCGTCAGGCGTCGAAGAAAGAATGGTGGTGATACTAATGAAGGAACATTATCAGCATTACCAGCAGCCAGAATGGTTTCATACTATGAACTATCACAGGCAACTAATGGATTTGATGAGAGTAATTTGCTTGGTAGGGGCAGTTTTGGCTCTGTGTTCAAAGGTTTACTTTCAAATGGGATGGTGGTTGCTGTCAAAGTGTTTAACTTGGACTTGGAATTAGGATCAAAGAGCTTCAGTGTAGAATGCGAAGCAATGCGCAATCTGCGCCATCGAAATCTCATCAAGATCATAGGTTGTTGTTCAAGTATAGATTACAAGCTTTTAGTGATGGAGTTCATGCCTAATGGGAGCCTTGAGAGATGGTTGCATTCTCATAACCATTGTTTGGGCTTCTTGCAAAGGCTAAATATAATGATAGATGTGGCATCTGCATTGGAGTATCTGCATCATGGATCTTCACCTATAGTGGTTCATTGTGATGTCAAACCTTGTAATGTCTTATTGGATGAAGACATGGTTGGCCATGTCAGTGACTTTGGCATTGCCAAATTGCTTGGCGAGGGACAATCCAAAGAATATACCAAGACCATGGCTACAGTTGGCTACATTGCACCGGAGTTTGGATCCAAAGGGATTATCTCTACAAAGGGAGATGTATACAGTTTTGGGATAATGCTGATGGAAACATTCACAAGAAAGAAGCCAACAGATGACTTGTTTGTTGCAGGATTAAGCATGAAAGGTTGGATTAGTGAATCATTACCCCATGCAATTGATCGAGTTGTGGATTCCAACTTGTTACAAGATGAAGGTCACCACCATGTTGATGACATAATAGCATCTACATCATCTATCTTGAAACTGGCCTTGAATTGTTGTGAGGATTTACCTGAAGAACGAATGAACATGACAGATATTGCTGCATCATTGAACAAAGTTAAGGCCATGTTTCTTAAAGCTAGTGACAAGGATGTCGTGCGGTTTTGTAGAAAATGA 3654 0.393 MNNKLYSSLWTFFTYCFSLQLHYYFFMSLIVSGTNFTTRDKHALVALKSSITQDPHHFLTHNWSTNSSVCNWFGVTCDHRHGRVRALNLGDMGLSGTIPSHLGNLSFLIELNLGGNTFHHNLPQELVHLRRLKSLNLSYNEFSGNVPQWIGALSSLQHLNLRNNRFGGVIPKSISNLTVLETLEIDHNLIEGSIPDEVGRMSQLRILSMSVNHLSGAIPPTISNLSSLRGISLSYNSLSGGIPVEIGELPELRVVYLGNNPLGGSIPRTMLNSSTLQDIEIGSSNLSGTLPSNLCSGLARIQVLYIAFNQLSGKLPSVWHHCKELTDVDLSNNKFSQGNIPRDIGNLTMLASLYLNQANLQGEIPPSLFNISSMRVLNLEQNKLNGSLTEEMFLQLPLLEYIYLVDNQFVGSIPKTISNCTMLQELHLGSNYFTGSIPEGIGDLLLTSLSMGNNHLSGSIPSNIFNMSSLSYLYLANNSLSGSLPSHISLENMEELNLYGNKLSGNIPSSISNATKLNYMDLKLNKFSGVIPNTIGNLRNLQQLDLGYNNLTTHSSTLELMYPSSLCDLYISGNPFHAKLPKSIGNMSNLELFDADACSIDGEIPLEIGNLTNLYALNLYRNDLSGTIPTTINGLQSLQYLSLGNNRLQGTIISEICKIKQLSELYITENKLISGEVPTCFGNLTSLRKLYLNSNKLSKVPSSLWSLKDILEVNLSDNALTLSLPIEIGNLKAVTFLDLSKNMISGSIPGAISGLQNLQILNLSQNKLVGGIPDSLGSLISLTDLDLFQNNLFGLIPRSLESLHYLEFINLSNNSLEGEIPSGGPFENFTAQSFMFNKALCGNARLQVPACSKVKKKGSNANIFFIKCILPIMVSIILVVFCVFFLVRRRRKNGGDTNEGTLSALPAARMVSYYELSQATNGFDESNLLGRGSFGSVFKGLLSNGMVVAVKVFNLDLELGSKSFSVECEAMRNLRHRNLIKIIGCCSSIDYKLLVMEFMPNGSLERWLHSHNHCLGFLQRLNIMIDVASALEYLHHGSSPIVVHCDVKPCNVLLDEDMVGHVSDFGIAKLLGEGQSKEYTKTMATVGYIAPEFGSKGIISTKGDVYSFGIMLMETFTRKKPTDDLFVAGLSMKGWISESLPHAIDRVVDSNLLQDEGHHHVDDIIASTSSILKLALNCCEDLPEERMNMTDIAASLNKVKAMFLKASDKDVVRFCRK* 1218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g5298 1217 Gene3D Ribonuclease Inhibitor 151 201 IPR032675 -
Amo13g5298 1217 Gene3D Ribonuclease Inhibitor 39 150 IPR032675 -
Amo13g5298 1217 Gene3D Ribonuclease Inhibitor 202 274 IPR032675 -
Amo13g5298 1217 SMART LRR_sd22_2 779 805 - -
Amo13g5298 1217 SMART LRR_sd22_2 201 227 - -
Amo13g5298 1217 SMART LRR_sd22_2 153 179 - -
Amo13g5298 1217 SMART LRR_sd22_2 731 757 - -
Amo13g5298 1217 SMART LRR_sd22_2 538 560 - -
Amo13g5298 1217 SMART LRR_sd22_2 684 706 - -
Amo13g5298 1217 SMART LRR_sd22_2 490 516 - -
Amo13g5298 1217 SMART LRR_sd22_2 635 658 - -
Amo13g5298 1217 Gene3D Transferase(Phosphotransferase) domain 1 999 1213 - -
Amo13g5298 1217 Pfam Leucine Rich Repeat 781 803 IPR001611 GO:0005515
Amo13g5298 1217 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 168 391 - -
Amo13g5298 1217 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 23 173 - -
Amo13g5298 1217 PANTHER - 23 173 - -
Amo13g5298 1217 Gene3D Ribonuclease Inhibitor 393 558 IPR032675 -
Amo13g5298 1217 Gene3D Ribonuclease Inhibitor 559 853 IPR032675 -
Amo13g5298 1217 Gene3D Phosphorylase Kinase; domain 1 888 998 - -
Amo13g5298 1217 SUPERFAMILY RNI-like 488 822 - -
Amo13g5298 1217 Pfam Protein kinase domain 924 1193 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo13g5298 1217 ProSiteProfiles Leucine-rich repeat profile. 686 708 IPR001611 GO:0005515
Amo13g5298 1217 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 299 553 - -
Amo13g5298 1217 SUPERFAMILY Protein kinase-like (PK-like) 904 1196 IPR011009 -
Amo13g5298 1217 PANTHER - 367 1203 - -
Amo13g5298 1217 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 367 1203 - -
Amo13g5298 1217 ProSitePatterns Protein kinases ATP-binding region signature. 929 951 IPR017441 GO:0005524
Amo13g5298 1217 Gene3D Ribonuclease Inhibitor 276 392 IPR032675 -
Amo13g5298 1217 Pfam Leucine rich repeat 730 768 IPR001611 GO:0005515
Amo13g5298 1217 Pfam Leucine rich repeat 492 551 IPR001611 GO:0005515
Amo13g5298 1217 Pfam Leucine rich repeat 155 214 IPR001611 GO:0005515
Amo13g5298 1217 Pfam Leucine rich repeat 350 409 IPR001611 GO:0005515
Amo13g5298 1217 Pfam Leucine rich repeat 661 720 IPR001611 GO:0005515
Amo13g5298 1217 ProSiteProfiles Protein kinase domain profile. 923 1204 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo13g5298 1217 PANTHER - 299 553 - -
Amo13g5298 1217 PANTHER - 168 391 - -
Amo13g5298 1217 SMART serkin_6 923 1203 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo13g5298 1217 SUPERFAMILY L domain-like 294 509 - -
Amo13g5298 1217 SMART LRR_typ_2 755 779 IPR003591 -
Amo13g5298 1217 SMART LRR_typ_2 611 635 IPR003591 -
Amo13g5298 1217 SMART LRR_typ_2 153 177 IPR003591 -
Amo13g5298 1217 SMART LRR_typ_2 684 707 IPR003591 -
Amo13g5298 1217 SMART LRR_typ_2 396 420 IPR003591 -
Amo13g5298 1217 SMART LRR_typ_2 446 467 IPR003591 -
Amo13g5298 1217 SMART LRR_typ_2 538 561 IPR003591 -
Amo13g5298 1217 SMART LRR_typ_2 371 395 IPR003591 -
Amo13g5298 1217 SMART LRR_typ_2 298 321 IPR003591 -
Amo13g5298 1217 SMART LRR_typ_2 490 514 IPR003591 -
Amo13g5298 1217 SMART LRR_typ_2 201 225 IPR003591 -
Amo13g5298 1217 SMART LRR_typ_2 731 754 IPR003591 -
Amo13g5298 1217 SMART LRR_typ_2 249 273 IPR003591 -
Amo13g5298 1217 SUPERFAMILY L domain-like 39 335 - -
Amo13g5298 1217 Pfam Leucine rich repeat N-terminal domain 40 78 IPR013210 -
Amo13g5298 1217 ProSiteProfiles Leucine-rich repeat profile. 540 561 IPR001611 GO:0005515
Amo13g5298 1217 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1042 1054 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g5298 Amo-Chr13 153135617 153145963 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g5298 40 551 Receptor kinase-like Gene Family AT3G47570 35.035 5.30e-79 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Amo13g5298 Pkinase 5.5e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g5298 - K13420 gmx:100784397 1686.77