Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g5287 ATGTCTGATGAAGCTAAACAACTTCTCTACCAAGACCTTATTCTAGATCATCATCAGAATCAGAATATTATTGCAGGAGGAGGAAGATTATCCAACAACATGTTCTGTGAGAAGCAGTTTCCATCATCATCATCATCATCATCACAAGTAGCGTTTGATCCATCTTCATACATGAGCTTCACTGAATGCCTTCAAGGAGGGATGGACTATAACTCGCTTGCAACTTCTTTTGGTTTGTCTCCTTCTTCATCGGAGGTCTTTTCATCCATCGAAGGCAACAATAATAATCAAAAGCCCGAAGGTGATGTATTAGGAACTGGTGGTGGTGGTGGTGGAGGTAGTGAAACCCTTGCAACCCTGAACTCATCGATCTCTTCGTCATCATCTGAAGCCGGGGGCGAAGAAGATTCTGGAAAGAGCAACAAAGATAGCCAGGTCAAAGAAGAAGCAGCAGGAGAAACCTCTAAGAAGGGGAACAAGGAGAATAATAATAACAAGAAGAAAGGGGAGAAGAAGCAGAAGGAGCCAAGGTTTGCGTTCATGACAAAGAGCGAGGTTGATCATCTTGAAGATGGATACCGATGGAGAAAATACGGACAGAAAGCCGTTAAGAATAGCCCTTATCCAAGGAGTTACTACAGATGCACGACACAGAAGTGCAGCGTGAAGAAACGCGTGGAGAGGTGTTATCAGGATCCAACGACTGTGATAACAACCTATGAAGGTCAACACAACCATCCAGTCCCCACTTCTTTGAGAGGGAATGCGGCTTCAATGTTCACACCTTCCATGCTCTCCATCTCCGCCCCCACTCCCCTCCTCTCATCCGCCGGACATCACGACCTCGCCCTTTTTGCTCCTCTCTCTCACCACCACAACCAATATTCCGCTGCTTCTGGATCACAATCGTCCTTATTGTTTCATCACCATCAGAGTATTAACAACAACGTTAATAACAACAATATTAATAATAATAATAATAACTCTCTTCTTCTTCTCAATCATCATCATCATCCGTATAATAATCAGCAGCTTCCTCCTGAATATGGCCTCCTTCAAGACATGCTCCCTTCCATGTTCCTCAAGCAAGAGCCATGA 1098 0.4417 MSDEAKQLLYQDLILDHHQNQNIIAGGGRLSNNMFCEKQFPSSSSSSSQVAFDPSSYMSFTECLQGGMDYNSLATSFGLSPSSSEVFSSIEGNNNNQKPEGDVLGTGGGGGGGSETLATLNSSISSSSSEAGGEEDSGKSNKDSQVKEEAAGETSKKGNKENNNNKKKGEKKQKEPRFAFMTKSEVDHLEDGYRWRKYGQKAVKNSPYPRSYYRCTTQKCSVKKRVERCYQDPTTVITTYEGQHNHPVPTSLRGNAASMFTPSMLSISAPTPLLSSAGHHDLALFAPLSHHHNQYSAASGSQSSLLFHHHQSINNNVNNNNINNNNNNSLLLLNHHHHPYNNQQLPPEYGLLQDMLPSMFLKQEP* 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g5287 365 MobiDBLite consensus disorder prediction 115 134 - -
Amo13g5287 365 SMART WRKY_cls 189 248 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo13g5287 365 MobiDBLite consensus disorder prediction 81 101 - -
Amo13g5287 365 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 1 312 IPR044810 GO:0003700
Amo13g5287 365 PANTHER WRKY TRANSCRIPTION FACTOR 81 1 312 - -
Amo13g5287 365 Pfam WRKY DNA -binding domain 190 247 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo13g5287 365 Gene3D WRKY domain 173 250 IPR036576 GO:0003700|GO:0006355|GO:0043565
Amo13g5287 365 MobiDBLite consensus disorder prediction 135 178 - -
Amo13g5287 365 MobiDBLite consensus disorder prediction 81 178 - -
Amo13g5287 365 ProSiteProfiles WRKY domain profile. 184 249 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo13g5287 365 SUPERFAMILY WRKY DNA-binding domain 181 249 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g5287 Amo-Chr13 153002685 153004760 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g5287 40 365 WRKY Transcription Factor Family AT4G18170 47.337 4.56e-74 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Amo13g5287 WRKY 7.4e-25 CL0274
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g5287 13 153002685 153004760 Amo13g5287 13 153002685 153004760 ECH