Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g5255 ATGGATCATTATACTCTAGGTGGAGTTATGGAGAATAATAATAATAATAACAACAAGGAGAAGTACTATCAAGGTGATTTGAGTGACATAATCCGTGCTAGTTATGGTTATTATGGGAGCTACAACTCAGCATCATCTGAAGCTTCTTACATGGTGGAAGACCCTCCTATGATGGCAAACTTTGGTGATCCTTTCTCAAACTCGGGAGGAGATCCCTTGCTACATGATATGCCCTACTTTAACACTTTATCTTTGGGACTGGAAGCTGCTACTTGTGATGATGATGATGATGATTGTATCATGACTCATCATCAAATCTCTCATCCCAACCCCAATTTATTATTACCCACCATCTCAACGTGTCAAGATTCTTCCTCCACAATAATGACAGTTAATAATAATAGTACCAAGCCTTCTTCTGCTTATTGCTTGGTGGATAATAACACAGGACCAATGGTAGTGCAGATCTCAGCTCCTGTTAATAAGCGAAGGAAAAGTCAGGCAAAGAAGTCAATTTGTATTCCAGCAGCAGCAGCACCAAGCAGTAGACAAGGTGGAGAGGTAGTTCCCTCTGATCTGTGGGCTTGGAGGAAATACGGTCAAAAACCCATTAAAGGTTCTCCATATCCAAGGGGTTACTATAGATGCAGCAGCACAAAGGGTTGCCCTGCAAGGAAACAAGTGGAGAGGAGCAGAACAGATCCAAACATGTTGGTCATTACTTATACTTCCGAACACAACCATTCATGGCCAACTCAAAGAAACGCTTTGGCTGGTTCATCACGATCCAATAAGAACACAATCACAACAACAAAGCCAGAAGAGCAACAACACAGCAACACTGACAGCAACACTGCGTTACTCGCAGTGAAGAAGGAAGACATTCATAATAATAACAATCTTGAGGACTTGTTTGCAGAATTGGGACAAGTGGAGCGTGATTATATATGCTGA 954 0.4161 MDHYTLGGVMENNNNNNNKEKYYQGDLSDIIRASYGYYGSYNSASSEASYMVEDPPMMANFGDPFSNSGGDPLLHDMPYFNTLSLGLEAATCDDDDDDCIMTHHQISHPNPNLLLPTISTCQDSSSTIMTVNNNSTKPSSAYCLVDNNTGPMVVQISAPVNKRRKSQAKKSICIPAAAAPSSRQGGEVVPSDLWAWRKYGQKPIKGSPYPRGYYRCSSTKGCPARKQVERSRTDPNMLVITYTSEHNHSWPTQRNALAGSSRSNKNTITTTKPEEQQHSNTDSNTALLAVKKEDIHNNNNLEDLFAELGQVERDYIC* 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g5255 317 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 107 286 IPR044810 GO:0003700
Amo13g5255 317 Pfam WRKY DNA -binding domain 192 248 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo13g5255 317 Gene3D WRKY domain 164 244 IPR036576 GO:0003700|GO:0006355|GO:0043565
Amo13g5255 317 ProSiteProfiles WRKY domain profile. 185 251 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo13g5255 317 PANTHER WRKY TRANSCRIPTION FACTOR 14-RELATED 107 286 - -
Amo13g5255 317 SMART WRKY_cls 190 250 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo13g5255 317 MobiDBLite consensus disorder prediction 250 282 - -
Amo13g5255 317 SUPERFAMILY WRKY DNA-binding domain 189 251 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g5255 Amo-Chr13 152607125 152608988 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g5255 23 259 WRKY Transcription Factor Family AT1G30650 47.143 2.61e-64 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Amo13g5255 WRKY 1e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g5255 - - aip:107634728 574.704