Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g5249 ATGCTTTTTATGGATTCAGGTTCCTTTACTACGTCCCATGATGATGATAGTGATATTGGCGGGGAAAGAGCTTGTCCTTGTTCTGGTTCTGGCGCGGTTGATGGTTCCTTAATTGAGTGGTTTAACCGAACTTTCTCGTCGTGGCAAAAAGGTTACGTTTTGGGAAAGGGGTCGTTTGGAACCGTCTATGAAGGTTTTACAGATGATGGATTCTTTTTTGCGGTGAAGGAGGCATCTTTGCTGGATGAAGGTAGTAACCAGGGTAAACAGAGCTTATTCCAACTTCGGCAGGAAATATCTCTTTTGAGTCGGTTTCAACACGAGAATATAGTTCGATATTTTGGCACTCAAGAGGACCAAAGTTCACTTTATATCTTCCTTGAACTTGTGCCTAAAGGGTCATTGTTAAGTCTCTATCAGAAGTATAGCTTAAATGATTCTCACGTTTCTGCATACACAAGGCAGATTTTGCATGGCTTGAAATATCTTCACAATCAAAATGTGATTCACAGGGATATCAAGTGTGCCAATATCCTGGTTGATGTAAGCGGGTCAGTCAAGCTTGCGGATTTTGGGTTGGCAAAGGCAACTGAAAATGTTAAATCAAGCAAAGGATCCCCATACTGGATGGCCCCAGAGGTTGTTAACTTGAAGAATGATGATGGGTATGGACTAGCAGCTGATATATGGAGCTTAGGTTGTACAGTCTTGGAGATGTTGATAGGGAAACGTCCTTACTCTGATTTGGAAGGAGTGCAAGCATTATTTCGAATTGGGAGAGGAGAACCTCCGCCTATTCCTGAAACATTGTCGAAGGATGCCAGGGATTTTATCCTTGAGTGCTTACAAGTTAACCCAAGTAAACGGCCAACTGCAGCTCAGTTATTGGAACATCCATTTCTAAGGAGACCGGTGGCGGAACTTGAAACAAAATTTTGGGGGGCCAGATAA 951 0.428 MLFMDSGSFTTSHDDDSDIGGERACPCSGSGAVDGSLIEWFNRTFSSWQKGYVLGKGSFGTVYEGFTDDGFFFAVKEASLLDEGSNQGKQSLFQLRQEISLLSRFQHENIVRYFGTQEDQSSLYIFLELVPKGSLLSLYQKYSLNDSHVSAYTRQILHGLKYLHNQNVIHRDIKCANILVDVSGSVKLADFGLAKATENVKSSKGSPYWMAPEVVNLKNDDGYGLAADIWSLGCTVLEMLIGKRPYSDLEGVQALFRIGRGEPPPIPETLSKDARDFILECLQVNPSKRPTAAQLLEHPFLRRPVAELETKFWGAR* 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g5249 316 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 8 305 - -
Amo13g5249 316 SUPERFAMILY Protein kinase-like (PK-like) 40 306 IPR011009 -
Amo13g5249 316 Gene3D Transferase(Phosphotransferase) domain 1 46 312 - -
Amo13g5249 316 Pfam Protein kinase domain 50 301 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo13g5249 316 ProSitePatterns Protein kinases ATP-binding region signature. 54 76 IPR017441 GO:0005524
Amo13g5249 316 PANTHER BNAA02G34600D PROTEIN 8 305 - -
Amo13g5249 316 ProSiteProfiles Protein kinase domain profile. 48 301 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo13g5249 316 SMART serkin_6 48 301 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo13g5249 316 ProSitePatterns Serine/Threonine protein kinases active-site signature. 168 180 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g5249 Amo-Chr13 152491129 152494172 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g5249 5 305 MAP Kinase Kinase Kinase AT4G08500 62.376 4.77e-127 374
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Amo13g5249 Pkinase 3.4e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g5249 - K13414 aip:107631583 582.022
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g5249 13 152491129 152494172 Amo20g0555 20 6966023 6968734 PCT