Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g5246 GCCAAGCACATTCCTCTGTACTTTCGCAGAAGCCAACTGTGCAGAGGGAAACACTCTCTCACTAGAGAGAGAGAGAGAGAAATAAGGGAGCTTCAGAGAAGCACAGAAAACCTCGAGCAATCGCCATCATCAATGGAGTCCATCTGGAAGATCAGAAGCAAGACCAGCAGCAACAGGAAGCCCAGGCTAGAGCGCCTCAACGCCAGAAAGAACATCAATTACAATCCACCCGCAAATCCTCATTCGCCACCTTCTTCCTCCTCCTCTTCCTCTTCTCTCCACCACCAAACTAGCTTTAGGGTCACCGACGGCGATTTCGACCTAATCTTCCAAAGCCTGGGCCTTTCTGGCCCCGAAGATTTTTCCATCCCAACTGCAGATTGGGAAGCCAGGAAGGTTCGCTTTGCTTCTCATACTTCTAATGCTGCCGCTGAGCCCAAGGAGGATCGAAATTCAGCTGAAGTGAAATCTGGGGTTTTTCTTGATTCGGATTCCCAGCTTAAAAATGACAACTTTTCGAGACCCGTTGAAGTGGGAGGCTCCAAGTTTGGTGTTTCTTCAGATGTGAAGGTTTTGGGTGGTAAAAATGGAGATGGGGCTGGCGGGGGAGGGATCAAGGGTGCCAGGCCTCCGCTCTTGAGGCCAATTGTTGTTGATGCGGTTGGTTCGAATTGGGAATTAAAGAGGTCCTTTGGTCTCCAAGATAATTTTGTTGGTATTGGAGTTGTTGGTGATTCGCCTTCGTCTTCTGGTGAAATCGGCGTTGTTGGTAGGGTGAGAAATGGGGAAAGAAGCATGCTTTTTACGGATTCAGGTTCCTTTACTACATCCCATGATGATGATAGTGATATTGGCGGGGAAAGAGCTTGTTCTTCTTCTGGTTCTGGCGCGGTTGATGGTTCCTTAATTGAGTGGTTTAACCGAACTTTCTCGTCGTGGCAAAAAGGTGACGTTTTGGGAAAGGGGTCGTTTGGAACCGTCTATGAAGGTTTTACAGATGATGGATTCTTTTTTGCGGTGAAGGAGGCATCTTTGCTGGATGAAGGTAGTAACCAGGGTAAACAGAGCGTATTCCAACTTCGGCAGGAAATATCTCTTTTGAGTCGGTTTCAACACGAGAATATAGTTCGATATTTTGGCACTCAAGAGGACCAAAGTTCACTTTATATCTTCCTTGAACTTGTGCCTAAAGGGTCATTGTTAAGTCTCTATCAGAAGTATAGCTTAAATGATTCTCACGTTTCTGCATACACAAGGCAGATTTTGCATGGCTTGAAATATCTTCACAATCAAAATGTGGTTCACAGGGATATCAAGTGTGCCAATATCCTGGTTGATGTAAGCGGGTCAGTCAAGCTTGCGGATTTTGGGTTGGCAAAGGCAACTAAATTTAATGATGTTAAATCAAGCAAAGGATCCCCATACTGGATGGCCCCAGAGGTTGTTAACTTGAAAAATGATGGGTATGGACTAGCAGCTGATATATGGAGCTTAGGTTGTACAGTCTTGGAGATGTTGATAAGGAAACCTCCTTACTCTGATTTGGAAGGAATGCAAGCATTATTTCGAATTGGGAGAGGAGAACCTCCGCCTATTCCTGAAACATTGTCGAAGGATGCCAGGGATTTTATCCTTGAGTGCTTACAAGTTAACCCAAGTAAACGGCCAACTGCAGCTCAGTTATTGGAACATCCATTTCTAAGGAGACCATTTCTTTCTTCCTATTCCACTGCGTCGCCACATATTAAAACCTTTAAGAGCTTATAG 1767 0.4527 AKHIPLYFRRSQLCRGKHSLTREREREIRELQRSTENLEQSPSSMESIWKIRSKTSSNRKPRLERLNARKNINYNPPANPHSPPSSSSSSSSLHHQTSFRVTDGDFDLIFQSLGLSGPEDFSIPTADWEARKVRFASHTSNAAAEPKEDRNSAEVKSGVFLDSDSQLKNDNFSRPVEVGGSKFGVSSDVKVLGGKNGDGAGGGGIKGARPPLLRPIVVDAVGSNWELKRSFGLQDNFVGIGVVGDSPSSSGEIGVVGRVRNGERSMLFTDSGSFTTSHDDDSDIGGERACSSSGSGAVDGSLIEWFNRTFSSWQKGDVLGKGSFGTVYEGFTDDGFFFAVKEASLLDEGSNQGKQSVFQLRQEISLLSRFQHENIVRYFGTQEDQSSLYIFLELVPKGSLLSLYQKYSLNDSHVSAYTRQILHGLKYLHNQNVVHRDIKCANILVDVSGSVKLADFGLAKATKFNDVKSSKGSPYWMAPEVVNLKNDGYGLAADIWSLGCTVLEMLIRKPPYSDLEGMQALFRIGRGEPPPIPETLSKDARDFILECLQVNPSKRPTAAQLLEHPFLRRPFLSSYSTASPHIKTFKSL* 589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g5246 588 Gene3D Transferase(Phosphotransferase) domain 1 311 585 - -
Amo13g5246 588 SUPERFAMILY Protein kinase-like (PK-like) 310 575 IPR011009 -
Amo13g5246 588 PANTHER SERINE/THREONINE/DUAL SPECIFICITY PROTEIN KINASE, CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED 58 150 - -
Amo13g5246 588 PANTHER SERINE/THREONINE/DUAL SPECIFICITY PROTEIN KINASE, CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED 202 569 - -
Amo13g5246 588 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 58 150 - -
Amo13g5246 588 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 202 569 - -
Amo13g5246 588 ProSitePatterns Protein kinases ATP-binding region signature. 319 341 IPR017441 GO:0005524
Amo13g5246 588 Pfam Protein kinase domain 314 567 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo13g5246 588 MobiDBLite consensus disorder prediction 31 97 - -
Amo13g5246 588 Coils Coil 17 41 - -
Amo13g5246 588 ProSitePatterns Serine/Threonine protein kinases active-site signature. 433 445 IPR008271 GO:0004672|GO:0006468
Amo13g5246 588 SMART serkin_6 313 567 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo13g5246 588 ProSiteProfiles Protein kinase domain profile. 313 567 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo13g5246 588 MobiDBLite consensus disorder prediction 35 54 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g5246 Amo-Chr13 152464949 152469258 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g5246 62 571 MAP Kinase Kinase Kinase AT4G08500 45.423 4.33e-136 407
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Amo13g5246 Pkinase 1.3e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g5246 - K13414 aip:107631583 1036.17