Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g5238 ATGGCGTCGTCGAAGATTGTCACGACGAATACGGATCTGCCACGCGACTCTTCTTCTTCTTCTTCTTCTTCCTCTTCTTCTTCTGCTGCTGCTGCTTCTTCTAATTATTATTCCCTTCTTCACAATCAAAATCTGCATTATTATTCAAACTCGTCCGTGGTAATGGACGATCTTCTAAACTCCATCTACACCACCACAACAACCACCACCTCTCACCCCTCAAATCCTTCTTCATCCCCTCCTCCTCCGCCCAAAACCGTCGATGATGTCTGGAAAGACATGATCCTAACCCACTCTCACAGAGACTCAACTCACCATAATCACCACCCGTTCGAGGAAATGACCCTTGAGGCTTTCCTCTCAAAAAACGCTGCCGTCACTGATGACGACGTCACCGCTGTTGCTCCTCTTCATAATCATCATCCTGTTCCTCATCAGTTCCCGCAGGTGCCCGCCGTTGAAGGCTCATCCTCCTCCGCAGCTGAGCCTTTTGCCAATGGGATTGATGCTGCGGTGGCAAGTGGAGTCCCAGCACCCTCGTCATCATCAGGAGGAGGCGGCGGTGGTGGAGGAGGAGGGGCAGCTGCGGTGGCAAAGGGAAAGAGAAGGGCGGTGGAGGAACCAGTGGACAAGGCCACTCTTCAAAAGCAGAGACGCATGATCAAGAATCGTGAGTCTGCTGCTAGGTCCAGGGAACGCAAGCAGGCTTACACAACTGACCTTGAGTCTAATGTTCAACAGCTGGAGATAGAGAATGCCCGGTTATTGAGTGAAGAGGCTGAAAAGAAAAAGAAGAGATTGAAGGAGCTTCTTGAGTTTGTCATCCCAGTTGTGGAGAAGCGTAAACCAAAAAAGCTTCTAAGAACGAATTCAGTTCAGTCATTGTGA 888 0.4989 MASSKIVTTNTDLPRDSSSSSSSSSSSSAAAASSNYYSLLHNQNLHYYSNSSVVMDDLLNSIYTTTTTTTSHPSNPSSSPPPPPKTVDDVWKDMILTHSHRDSTHHNHHPFEEMTLEAFLSKNAAVTDDDVTAVAPLHNHHPVPHQFPQVPAVEGSSSSAAEPFANGIDAAVASGVPAPSSSSGGGGGGGGGGAAAVAKGKRRAVEEPVDKATLQKQRRMIKNRESAARSRERKQAYTTDLESNVQQLEIENARLLSEEAEKKKKRLKELLEFVIPVVEKRKPKKLLRTNSVQSL* 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g5238 295 SMART brlzneu 211 273 IPR004827 GO:0003700|GO:0006355
Amo13g5238 295 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 218 233 IPR004827 GO:0003700|GO:0006355
Amo13g5238 295 MobiDBLite consensus disorder prediction 175 210 - -
Amo13g5238 295 PANTHER OS05G0437700 PROTEIN 2 293 - -
Amo13g5238 295 SUPERFAMILY Leucine zipper domain 215 263 IPR046347 GO:0003700|GO:0006355
Amo13g5238 295 MobiDBLite consensus disorder prediction 66 89 - -
Amo13g5238 295 Coils Coil 238 270 - -
Amo13g5238 295 Pfam bZIP transcription factor 212 270 IPR004827 GO:0003700|GO:0006355
Amo13g5238 295 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 2 293 IPR043452 GO:0003700|GO:0045893
Amo13g5238 295 CDD bZIP_plant_BZIP46 215 255 - -
Amo13g5238 295 Gene3D - 214 272 - -
Amo13g5238 295 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 213 258 IPR004827 GO:0003700|GO:0006355
Amo13g5238 295 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g5238 Amo-Chr13 152347772 152351117 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g5238 85 293 bZIP Transcription Factor Family AT5G44080 41.593 1.78e-36 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Amo13g5238 bZIP_1 3.4e-13 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g5238 K14432 - gmx:100101890 170.244
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g5238 13 152347772 152351117 Amo13g5238 13 152347772 152351117 ECH