Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g5231 ATGGAAGGGTTGAAACCAGTGATACTAATGGTGTTACTACAGATATTATATGCAGCGCTGAACGTGTTGTATAAGCTCGCTATATTTGATGGAATGAGCATGAGAGTGGCTTCTGCTTACCGTCTCATCTTTGCATCTGCTTTTACTCTCCCACTTGCTCTCTTCTTTGATAGGAACAACCCACCAAGAATTACCAGCAAGGTGCTTTTTATGGAATGTCTTTGTGGATTTTTCGGCGGAAGTTTATTTCTCAACCTTTATTTTGCGGCCCTGTCTCTGTTGCCCGCGACGTTCATGTTGGCCATCAACAACCTTGCTCCGGCTGTCACCTTCTTTGGAAAAACTGAACTTGGGATCCGCAGCGGGAAAAGCAAAGGTGTTGAAATTGATATTTGGTCCACACACATAGATCTCTTGCATCATAATCATCCGCCACCACATGCTGAATATGCCAACAAACTCTTGGGTCTCACATTTGCCATAGCAAGCTGCTGCTCCTTTTCTCTCTGGCTCAACATTCAGGGTAAAATGAATGGTAAAGAATACCCAAGGCATCACACAGGGACAGCATTGATGTCCACAATGGGCGCAATACAAGCCACTGTTTTTGCTCTTTGTGTTGATAGGGATTGGACCCAATGGCGCCTTGGTTGGAACATAAGGCTTCTCACTGTGGCTTACGCGGGAATCGTAGCATCGGGTATAGTGATTATAATTACTGCGTGGTGCATAAAAGTGAGAGGCCCTCTATTTGCGTCTATTTTCAATCCTCTACAGCTTCTGCTTGTGGCTATTGTTGCTTCTTTGATTCTCAATGAGAATTTATATTTAGGAAGTGTGGTTGGAGGAGTGGTGATCGTGATTGGCTTGTACACGGTGCTATGGGGAAAGAGCAAAGAAATTGAAGAGAAGCAGAGGATGGATGAGTTAGTTTCATTACAAATAATGAATAATAATAAAGGGATGGTGTTGTTGCAAGGGTTGAAGCCAATAATGCTCATGGTGTTGGTGCAGATAACATTTGTGGTGGTGAATGTGTTGTACAAGATGGCCATTAATGATGGAATGAGCATGAGAGTTGCTACTGCTTATCGCCTCATCTTTGCTTCCGCCTTCACTCTCCCCGTTGCTCTCATTTTTGATACCAACAACAACAATAAACCCAAGATTACTCCAAGGGTGCTTCTTTTGGAATTTCTTTGTGGATTATTTGGGGGAACTTTATTTCTGAACTTTTACTTCGCGGCATTGGCTTTGATGCCAGCAACGTTTGTGTTGGCCATCCTTAATCTTTGTCCAGCTGTCACCTTCATCATGGCCATAACCTCAGGTTTGGAAAAGTTGAATTTGGGAGCAGCAGCAGGGAAGGCCAAAGTAATAGGAACAATAACCGGAATCAGTGGTGCAATGGTGTTGACGTTTTACAAAGGCAAACAAATTGATACATGGTCTTCTTCTTCCCGTATCAACCTCTTGCATCATGTACATGGCCGTGATTATGGTAACAAATTCTTGGGTTTTTCATATGCAACTGCAAGCTGCTGCTCTTTTGCATTGTGGCTCAACATTCAGGCTAAGTTGAATCAAGAATTCCCCAGGCACCACACAGGCACAGCTCTTATGTGCACTATGGCCGCATTACAATCCACTCTCTTTGCTCTCTCTCTTGATAGGGATTGGGCCTCCCAATGGAAGCTTGCTTGGAATATCAGGCTCCTCACTGTCGCTTATTCGGGAATTGTGACGTCTGGAATTGTGGTTAATATTATTGCATGGTGCGTGCATATGAGAGGCCCTCTATTTTGCTCTGTTTTCAATCCTCTGCAGCTTGTGCTTGTGGCCATAGCTGCTTCCTTCTTGTTGAATGAGAATTTATATTTAGGAAGTGTGATTGGAGGAGTGTTGATAGTGATTGGGCTATACACAGTGCTTTGGGGGAACAGCAGAGAAACCAAACACAAGATTCAGATTCACACTCAGTTATCAGAAGAAATCACAAGAGATCCTCTTCAAGTTATTGTTATGTCCCCGCAGAAACAACAACAAAACTCATCATCAAATTCAGAATTGCCCTCCTCATAA 2082 0.4332 MEGLKPVILMVLLQILYAALNVLYKLAIFDGMSMRVASAYRLIFASAFTLPLALFFDRNNPPRITSKVLFMECLCGFFGGSLFLNLYFAALSLLPATFMLAINNLAPAVTFFGKTELGIRSGKSKGVEIDIWSTHIDLLHHNHPPPHAEYANKLLGLTFAIASCCSFSLWLNIQGKMNGKEYPRHHTGTALMSTMGAIQATVFALCVDRDWTQWRLGWNIRLLTVAYAGIVASGIVIIITAWCIKVRGPLFASIFNPLQLLLVAIVASLILNENLYLGSVVGGVVIVIGLYTVLWGKSKEIEEKQRMDELVSLQIMNNNKGMVLLQGLKPIMLMVLVQITFVVVNVLYKMAINDGMSMRVATAYRLIFASAFTLPVALIFDTNNNNKPKITPRVLLLEFLCGLFGGTLFLNFYFAALALMPATFVLAILNLCPAVTFIMAITSGLEKLNLGAAAGKAKVIGTITGISGAMVLTFYKGKQIDTWSSSSRINLLHHVHGRDYGNKFLGFSYATASCCSFALWLNIQAKLNQEFPRHHTGTALMCTMAALQSTLFALSLDRDWASQWKLAWNIRLLTVAYSGIVTSGIVVNIIAWCVHMRGPLFCSVFNPLQLVLVAIAASFLLNENLYLGSVIGGVLIVIGLYTVLWGNSRETKHKIQIHTQLSEEITRDPLQVIVMSPQKQQQNSSSNSELPSS* 694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g5231 693 SUPERFAMILY Multidrug resistance efflux transporter EmrE 213 299 - -
Amo13g5231 693 Pfam EamA-like transporter family 5 111 IPR000620 GO:0016020|GO:0016021
Amo13g5231 693 Pfam EamA-like transporter family 155 294 IPR000620 GO:0016020|GO:0016021
Amo13g5231 693 Pfam EamA-like transporter family 329 472 IPR000620 GO:0016020|GO:0016021
Amo13g5231 693 Pfam EamA-like transporter family 506 644 IPR000620 GO:0016020|GO:0016021
Amo13g5231 693 PANTHER WAT1-RELATED PROTEIN 329 658 IPR030184 GO:0016021|GO:0022857
Amo13g5231 693 PANTHER MTN21/EAMA-LIKE TRANSPORTER FAMILY PROTEIN, PUTATIVE-RELATED 329 658 - -
Amo13g5231 693 SUPERFAMILY Multidrug resistance efflux transporter EmrE 559 649 - -
Amo13g5231 693 PANTHER MTN21/EAMA-LIKE TRANSPORTER FAMILY PROTEIN, PUTATIVE-RELATED 133 321 - -
Amo13g5231 693 PANTHER MTN21/EAMA-LIKE TRANSPORTER FAMILY PROTEIN, PUTATIVE-RELATED 7 112 - -
Amo13g5231 693 PANTHER WAT1-RELATED PROTEIN 133 321 IPR030184 GO:0016021|GO:0022857
Amo13g5231 693 PANTHER WAT1-RELATED PROTEIN 7 112 IPR030184 GO:0016021|GO:0022857
Amo13g5231 693 SUPERFAMILY Multidrug resistance efflux transporter EmrE 364 473 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g5231 Amo-Chr13 152281384 152289185 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g5231 328 691 Nodulin-like Gene Family AT1G25270 38.753 6.70e-75 243
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g5231 - - gsj:114424758 611.298
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g5231 13 152281384 152289185 Amo20g0542 20 6819031 6826474 PCT
Amo20g0543 20 6835132 6836895 Amo13g5231 13 152281384 152289185 PCT