Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g5229 ATGGTGGGAAGTGTTGATTCAAGCATGAATGGAGGAGGTGTAGGGGGATGTTTGATCAAAGAACTAGTCCATCATGATGGCGAAAGGGAGAAGATAGTTCTGGGAAGAGATATGCATACGGTGTCGTTTGAAATCACTGAACCAGATCTGGATGATGACGTTACAGGAGAAAGAGAAGCTTATATGGCTAGTGTTTTATCCAAGTACAAAAAATCCCTGACAGAAAAAACCAAGTTCCATCTAGGCTATCCGTACAATCTGGATTTCGACTACGATGCGCTGTGTCAGCTTCAGCACTTCTCCATAAACAACCTGGGGGATCCGTTTATTGAGAGCAACTACGGGGTGCACTCGAGGCAGTTCGAGGTTGGTGTTTTGGACTGGTTTGCAAGGTTGTGGGAACTTGACAAGAACCAGTACTGGGGATACATAACAAACTGTGGCACAGAAGGGAATCTCCATGGAATCCTTGTTGGCAGAGAGGTGTTTCCAGATGGAATCTTGTATGCCTCTCAGGAATCACACTACTCCGTTTTCAAGGCTGCTCGCATGTACAGAATGGACTGTGTCAAAGTCAACACTCTTTCCTCTGGCGAGATTGATTGCCATGATTTTAAGTCCAAGCTTCTTTGTAACAAGGATAAGCCTGCAATTGTTAATGTTAACATAGGTACAACTGTCAAAGGAGCTGTTGATGATCTTGATTTGGTTATTAACAAGCTTCAGGAAGCAGGATTCTCCCATGACAGATTCTATATCCATTGTGATGGGGCTTTGTTTGGTCTCATGTTACCTTTTGTCAAACGAGCTCCGAAAGTGAGTTTCAAGAAGGCAATTGGAAGCGTGAGTGTGTCAGGGCACAAATTCGTTGGGTGTCCAATGCCATGTGGGGTGCTGATAACAAGATTGGAACACGTGAAGGTGCTGTCAAGGAACGTAGAGTACCTTGCCTCGAGAGATGCAACAATCATGGGTAGCCGTAACGGCCACGCGCCACTCTTCCTATGGTACACTCTAAACAGAAAAGGATACAGGGGATTCCGGAAAGAGGTTCAGAAATGCTTGAGGAACGCACACTACTTCAAGGACCGCCTCGTCCACGCGGGGATCGGAGCAATGCTGAACGAGCTCAGCAGCACCGTCGTGTTTGAGCGCCCTCACGACGAGGAGTTCGTGCGCAAGTGGCAGTTGGCGTGCCAGGGGAACATAGCACATGTTGTGGTCATGCCAAACGTCACCATACACAAGCTGGATGATTTTCTTGACGAGCTTGTGCAAAAGCGTGATGCATGGTTCGGAGAAGGGAAATCTCAGCCTCCTTGTATAGCTTCTGATGTTGGCATACACAATTGCCTTTGTGCTTTGCATAGGTGA 1374 0.4694 MVGSVDSSMNGGGVGGCLIKELVHHDGEREKIVLGRDMHTVSFEITEPDLDDDVTGEREAYMASVLSKYKKSLTEKTKFHLGYPYNLDFDYDALCQLQHFSINNLGDPFIESNYGVHSRQFEVGVLDWFARLWELDKNQYWGYITNCGTEGNLHGILVGREVFPDGILYASQESHYSVFKAARMYRMDCVKVNTLSSGEIDCHDFKSKLLCNKDKPAIVNVNIGTTVKGAVDDLDLVINKLQEAGFSHDRFYIHCDGALFGLMLPFVKRAPKVSFKKAIGSVSVSGHKFVGCPMPCGVLITRLEHVKVLSRNVEYLASRDATIMGSRNGHAPLFLWYTLNRKGYRGFRKEVQKCLRNAHYFKDRLVHAGIGAMLNELSSTVVFERPHDEEFVRKWQLACQGNIAHVVVMPNVTIHKLDDFLDELVQKRDAWFGEGKSQPPCIASDVGIHNCLCALHR* 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g5229 457 Pfam Pyridoxal-dependent decarboxylase conserved domain 167 376 IPR002129 GO:0016830|GO:0019752|GO:0030170
Amo13g5229 457 ProSitePatterns DDC / GAD / HDC / TyrDC pyridoxal-phosphate attachment site. 281 302 IPR021115 GO:0016831
Amo13g5229 457 Gene3D - 96 339 IPR015421 GO:0003824
Amo13g5229 457 PANTHER - 24 457 - -
Amo13g5229 457 Gene3D Aspartate Aminotransferase, domain 1 340 429 IPR015422 GO:0003824
Amo13g5229 457 PANTHER SERINE DECARBOXYLASE 24 457 - -
Amo13g5229 457 SUPERFAMILY PLP-dependent transferases 72 429 IPR015424 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g5229 Amo-Chr13 152266420 152268353 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g5229 180 363 Calmodulin-binding Proteins AT1G65960 24.352 8.35e-08 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g5229 K25193 - gmx:100792053 795.038
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g5229 13 152266420 152268353 Amo20g0536 20 6764186 6768490 PCT
Amo20g0536 20 6764186 6768490 Amo13g5229 13 152266420 152268353 PCT