Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g5222 ATGGGGGATAGCAATAATGTCAATCTTCCACCGGGGTTTCGATTTTATCCCACTGATGAAGAGCTTGTAGTCCATTTCCTTCAGAGAAAAGCAGCACTTCTACCTTGCCACCCTGATGTCATTCCTGATCTTGATCTCTACTCTTTTGATCCATGGGAACTTGATGGTAGAGCTTTGGCAGAGGGGAACCAATGGTACTATTACAGCAGAAGGACACAAAATAGGGTCACTGCCAATGGTTATTGGAATCCAATGGGAATTGAAGAGGCAGTGGTTTCAAACTCAAGCAACAGGAGAGTTGGTATCAAGAAATTTTATGTGTTCTATGTTGGAGAAGCCCCTCATGGTAACAGAACCAATTGGATCATGCAAGAGTATCGTCTTTCAGATTCTGCAGCATCCTCTAGCAGATCATCAACCAAAAGAAAATCACAACCAAAAACATTATAA 450 0.42 MGDSNNVNLPPGFRFYPTDEELVVHFLQRKAALLPCHPDVIPDLDLYSFDPWELDGRALAEGNQWYYYSRRTQNRVTANGYWNPMGIEEAVVSNSSNRRVGIKKFYVFYVGEAPHGNRTNWIMQEYRLSDSAASSSRSSTKRKSQPKTL* 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g5222 149 SUPERFAMILY NAC domain 6 134 IPR036093 GO:0003677|GO:0006355
Amo13g5222 149 PANTHER NAC TRANSCRIPTION FACTOR 56 6 136 - -
Amo13g5222 149 Pfam No apical meristem (NAM) protein 10 128 IPR003441 GO:0003677|GO:0006355
Amo13g5222 149 PANTHER NAC DOMAIN-CONTAINING PROTEIN 104 6 136 - -
Amo13g5222 149 Gene3D NAC domain 18 148 IPR036093 GO:0003677|GO:0006355
Amo13g5222 149 ProSiteProfiles NAC domain profile. 9 149 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g5222 Amo-Chr13 152178145 152180155 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g5222 1 142 NAC Transcription Factor Family AT1G69490 44.371 1.06e-40 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Amo13g5222 NAM 1.1e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g5222 - - gmx:100788893 246.899
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g5222 13 152178145 152180155 Amo20g0527 20 6689031 6690317 PCT
Amo13g5222 13 152178145 152180155 Amo10g0368 10 3693817 3695306 PCT
Amo20g0527 20 6689031 6690317 Amo13g5222 13 152178145 152180155 PCT
Amo10g0368 10 3693817 3695306 Amo13g5222 13 152178145 152180155 PCT