Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g5221 ATGTGCCGGAAGGACGAATCTGAGTCTTGGTGTGCAACTTCAGAGACGAATATGGTATCGGTGCTTGGTTGGTGGCTTGCATGGGCCACCGATAACGAAGCTCTAGAGAAAGCCTTTTCTGCCTACGGAGAAATCGTTGAATCGAAGGTTATTAATGATCGCGAAACTGGAAGATCCAGAGGTTTCAGATTTGTAACCTTTGCTTCAGAACAAGTCATGAGGGATGCGATTGATGGCATGAACGGCCCCAACTTTAACGGCTGTAACATCATTATTAATGAGGCTCAATCCCGTGAAGGTGGCAGAAGCGGCGGTAGTGGTGGATATGAAAGCGGGACCATCATAAAAATGAGGTATACGTCAGTGGTGAGAAAGCGAAGGAGTGAGTATTTGAATCTAACACTCAAGTAA 411 0.4599 MCRKDESESWCATSETNMVSVLGWWLAWATDNEALEKAFSAYGEIVESKVINDRETGRSRGFRFVTFASEQVMRDAIDGMNGPNFNGCNIIINEAQSREGGRSGGSGGYESGTIIKMRYTSVVRKRRSEYLNLTLK* 137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g5221 136 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 15 97 IPR000504 GO:0003723
Amo13g5221 136 SMART rrm1_1 26 93 IPR000504 GO:0003723
Amo13g5221 136 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN GRP1A-LIKE 26 113 - -
Amo13g5221 136 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 26 90 IPR000504 GO:0003723
Amo13g5221 136 PANTHER TRANSFORMER-2-RELATED 26 113 - -
Amo13g5221 136 SUPERFAMILY RNA-binding domain, RBD 26 111 IPR035979 GO:0003676
Amo13g5221 136 Gene3D - 4 130 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g5221 Amo-Chr13 152164092 152166306 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g5221 29 129 Eukaryotic Initiation Factors Gene Family AT2G23350 34.653 4.42e-10 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g5221 - K13195 gmx:100777821 126.716