Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g5214 ATGGAGCGAGTGGTTTCATGTTTAATGGGATTGGGACCGTTTCTTCTTTATGCAGCTTTGGTATTTGATGTTATGCTTGAGGTTTCTGGCAATCAAGAAGGTGATGCCCTGAATGCATTCAAGACTCAGAGAGGCTTGAAAGATCCTAATAATGCTCTTCAAACCTGGGATGCCACTCTTGTAAATCCTTGCACATGGTTTCATGTCACTTGCAACCAAGATAATAGTGTGACCAGCATTGATCTTGGAAATGCACAGATTTCGGGTCATCTTGTTCCAGAACTTGGTAAACTTCAGAATTTGCAAAGGCTGGAACTTTTCAATAATGATTTAACTGGGCCTATCCCAAATGAGCTTGGAAATTTGATAAATTTGGAGAAGTTGGATCTTTACTCAAACAACTTAACTGGTGTCATACCAGACACATTGGGCAACCTTAAAAATTTACATGACCTGCGTCTCAACAACAACAGTTTGTCAGGAAAAATTCCCATATCTTTGACCAATATTTTGACTCTGCAAGTCCTTGATTTATCATACAACCAGTTAACAGGAAATATTCCAGTCAATGGTTCATTTTCATCATTTACCCCCGTCAGTTTCGAACATAACCACTTGAATGAAACAAAAAATCCATCTCCACGCTATGTTCCACCACAAAATACCACGTCAGGTAAGAGTGCCATCGGAGCTATTGCTGGAGGAGTTGCTGCTGGAGCTGCTTTATCAATTGCAGCCCCTGTGATTGTAGTTGCTTACTGGCTACGAAGGAAACCACAGGATGAGTACTTTGATGTTCCTGCTGAGGAGGATCCTGAAGTTCACCTTGGTCCGCTTAAGAAGTTTTCTCTTCGTGAGCTGCAAATTGCTACAGATCACTTCAATGCCAAAAATGTGTTGGGAAAGGGTGCGTTTGGTAAGGTTTATGAAGGACGCTTAGCCGATGGCAAGCCAGTAGCAGTGAAAAGACTTAAAGAGGAACGCGCCTACAGTGAGGACTTTCAGTTTCAAACTGAAGTGGAAATGATTGGCGTGGCTAAGCATCGCAATTTGCTTCAGCTGCTTGGTTTTTGTATGACTCCTACTGAACGCATGCTTGTGTATCCTTTGATGGTTAATGGAAGTCTAGCATCTTGCTTAAGAGGGCGTGCGCCATCAAAACCGCCGCTTGGTTGGGCACAACGGGAGTCTATTGCGCTGGGATCTGCCAAGGGGCTTGCTTATTTGCATGAGCATTGTAACCCGAAGATTATTCATCGTGATGTTAAAGCTGATAATATATTGCTAGACGAACACTTTGAAGCAGTTGTTGGAGATTTTGGTTTAGCAAAGCTTATGGAGTTTAAAGATACTCATGTTACCACAGCTGTAAAAGGGACAATTGGACATATAGCACCCGAATACCTCGGAACTGGAAAGTCTTCGGAGAAGACTGATGTTTATGGATATGGTGTGATGCTTCTTGAACTAATAACTGGACAGAGGTCTTTCGACATGGCAAGGATTGCCAGAGATGAAGAAATCTTATTGCTTGCTTGGGTAAAAGGGCATCTGAATGACAAGAAGTTGGACAAACTGGTGGATAGTGATTTACAGGGAGACTATAACTTAGAAAAGGTGGAGCAATTAATCCAAGTGGCCATATTATGCACACAAGACTCTCCTATGGATAGGCCTAACATGTCTGAGGTAGTGAGAATGCTGGAAGGTGATGGTTTGGCTGAAAGATGGGAGGAATGGAAGAAAAGGGACAAGATCCGGCAAGAATTCGACCGCACCCACCGTTATGTTGCCAATTTGAGGAACCGTGACGAGTCAACCTCAAATGCCAACATGGAACCAGAACAACTCTCAGCTTGTATTGGTAATGAAGTGTTCAGTGCTGGTTTGCTGAGGTCAACGAGGTCAACGCTGCTTTTGGAGCTTAAGGGGCACCATGGAGATCATCTAGTACTAAGAGAGACTCATGAGAATGAGTTTCTCATTTGTGCAATTCTGGTGCTTGACGTGATGCTGAAGGTTTCTGCTAATTCAGAAGGTGATGCCCTGAATTCTTTGAAGAACAGCTTGACAGATCCTGGTGATGTTCTTCAAAGCTGGGATTCCAGTCTTGTCAATCCATGTACATGGTTTCATGTTACTTGCAGCAATGATAATAGTGTGATCCGTGTTGATCTAGGAAATGCAAACCTTTCCGGTCAACTAGTTCCGGCACTTGGTCGGCTCCCAAATTTACAGTACTTGGAACTTTATAGCAATAATATCACTGGGAAAATTCCAGATGAGCTTGGAAATTTGAAAAACTTGGTGAGCTTGGATCTGTACGTGAATAAGTTAACCGGCCCTATACCGGACTCATTGAGCAACCTTAAAAAGCTACGTTTCCTGCGTCTCAACAACAATAGTTTGTCAGGAAAAATTCCCATGTCTTTGACAAGTGTGATGTCACTGCAAGTCCTTGATCTATCAAACAACAATTTAACAGGAGATGTTCCAATAAATGGTTCATTTTCAATGTTCACTCCAATCAGTTTTAAAAATAATAGCCCTGGCTTGAATGAAACAAACCCTCCATCTCCCCCCACTGCTCCACCTCCAAAAGCTTCTTCAGGTAGCAGTGCCACTGGATCTATTGCTGGAGGAGTTGCTGCAGGTGCTGCTCTGTTGTTTGCAGGCCCTGCCATTGCAGTTGCCTGTTTGCGAAGAAGGAAACGTGCTGATTATTTCTTTGATGTTCCTGCTGAGGAGGATCCTGAAGTTCATCTTGGTCAGCTTAAAAAGTTTTCGCTGCGTGAGCTGCAAGTCGCTACAGATAGCTTTAATAGCAAGAATATTCTTGGAAGAGGAGGGTTTGGCAAGGTTTATAAAGGACGCCTTACCAATGGTACTCTTGTAGCAGTAAAAAGACTTAAAGAGGAACGCACGCAGGGTGGGGAGCTTCAATTTCAAACTGAAGTGGAAATGATTAGCATGGCTGTCCATCGTAATTTGCTCCGGTTGCATGGTTTTTGTATGACACCTACCGAACGGTTGCTTGTGTATCCTTTCATGGCAAATGGAAGTGTAGCATCTTGTTTACGAGATCGTCCAGAAACACGTCCACCACTTGACTGGAAAAAAAGGAAGAGTATAGCACTGGGGTCTGCTCGGGGACTTGCTTATTTACATGATCATTGTAATCCAAAGATTATTCATCGTGATGTCAAAGCTGCTAATATATTGCTGGATGAGGATTTTGAAGCAGTTGTTGGAGATTTTGGCTTAGCAAAGCTGATGGATTACAGAAATACTCATGTTACCACTGCTGTACGTGGTACAATCGGGCATATAGCGCCGGAGTACCTCTCAACCGGAAAGTCTTCAGAGAAGACTGATGTTTTTGGATATGGTGTGATGCTTCTTGAACTGATAACCGGACAGAGGGCTTTTGATCTAGCACGTCTTGCCAATGATGATGATGTCATGTTGCTTCATTGGGTTAAAGGAATTCTGAAGGACAAGAAGCTGGAGACACTGGTTGATGCAGATTTACAGGGAAATTATGAAGATGAAGAGGTAGAGCAACTGATCCAGGTGGCCTTATTGTGCACACAAAGCTCCCCTATGGAAAGGCCTAAGATGTCTGAGGTGGTGAGCATGCTAGAAGGTGATGGTTTGGCAGAAAAATGGGATCAATGGCAGAAAGAGGAGATGCCAATGACCCAGCATGAATTCGACCGCATGCGCCATCACACTACTGATATGCTCTTAGACTCCACTTTCAATATCCCAGCAGATGAACTCTCTGGTCCTAGATGA 3798 0.4331 MERVVSCLMGLGPFLLYAALVFDVMLEVSGNQEGDALNAFKTQRGLKDPNNALQTWDATLVNPCTWFHVTCNQDNSVTSIDLGNAQISGHLVPELGKLQNLQRLELFNNDLTGPIPNELGNLINLEKLDLYSNNLTGVIPDTLGNLKNLHDLRLNNNSLSGKIPISLTNILTLQVLDLSYNQLTGNIPVNGSFSSFTPVSFEHNHLNETKNPSPRYVPPQNTTSGKSAIGAIAGGVAAGAALSIAAPVIVVAYWLRRKPQDEYFDVPAEEDPEVHLGPLKKFSLRELQIATDHFNAKNVLGKGAFGKVYEGRLADGKPVAVKRLKEERAYSEDFQFQTEVEMIGVAKHRNLLQLLGFCMTPTERMLVYPLMVNGSLASCLRGRAPSKPPLGWAQRESIALGSAKGLAYLHEHCNPKIIHRDVKADNILLDEHFEAVVGDFGLAKLMEFKDTHVTTAVKGTIGHIAPEYLGTGKSSEKTDVYGYGVMLLELITGQRSFDMARIARDEEILLLAWVKGHLNDKKLDKLVDSDLQGDYNLEKVEQLIQVAILCTQDSPMDRPNMSEVVRMLEGDGLAERWEEWKKRDKIRQEFDRTHRYVANLRNRDESTSNANMEPEQLSACIGNEVFSAGLLRSTRSTLLLELKGHHGDHLVLRETHENEFLICAILVLDVMLKVSANSEGDALNSLKNSLTDPGDVLQSWDSSLVNPCTWFHVTCSNDNSVIRVDLGNANLSGQLVPALGRLPNLQYLELYSNNITGKIPDELGNLKNLVSLDLYVNKLTGPIPDSLSNLKKLRFLRLNNNSLSGKIPMSLTSVMSLQVLDLSNNNLTGDVPINGSFSMFTPISFKNNSPGLNETNPPSPPTAPPPKASSGSSATGSIAGGVAAGAALLFAGPAIAVACLRRRKRADYFFDVPAEEDPEVHLGQLKKFSLRELQVATDSFNSKNILGRGGFGKVYKGRLTNGTLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLHGFCMTPTERLLVYPFMANGSVASCLRDRPETRPPLDWKKRKSIALGSARGLAYLHDHCNPKIIHRDVKAANILLDEDFEAVVGDFGLAKLMDYRNTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVMLLHWVKGILKDKKLETLVDADLQGNYEDEEVEQLIQVALLCTQSSPMERPKMSEVVSMLEGDGLAEKWDQWQKEEMPMTQHEFDRMRHHTTDMLLDSTFNIPADELSGPR* 1266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g5214 1265 Pfam Protein kinase domain 941 1212 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo13g5214 1265 Pfam Protein tyrosine and serine/threonine kinase 296 568 IPR001245 GO:0004672|GO:0006468
Amo13g5214 1265 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 13 608 - -
Amo13g5214 1265 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 661 1265 - -
Amo13g5214 1265 MobiDBLite consensus disorder prediction 848 875 - -
Amo13g5214 1265 Pfam Leucine rich repeat N-terminal domain 31 72 IPR013210 -
Amo13g5214 1265 Pfam Leucine rich repeat N-terminal domain 676 716 IPR013210 -
Amo13g5214 1265 PRINTS Leucine-rich repeat signature 173 186 - -
Amo13g5214 1265 PRINTS Leucine-rich repeat signature 814 827 - -
Amo13g5214 1265 SMART LRR_typ_2 814 839 IPR003591 -
Amo13g5214 1265 SMART LRR_typ_2 170 195 IPR003591 -
Amo13g5214 1265 SMART LRR_typ_2 742 766 IPR003591 -
Amo13g5214 1265 SMART LRR_typ_2 790 813 IPR003591 -
Amo13g5214 1265 SMART LRR_typ_2 122 145 IPR003591 -
Amo13g5214 1265 ProSitePatterns Protein kinases ATP-binding region signature. 300 322 IPR017441 GO:0005524
Amo13g5214 1265 ProSiteProfiles Protein kinase domain profile. 294 578 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo13g5214 1265 SMART serkin_6 940 1214 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo13g5214 1265 SMART serkin_6 294 568 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo13g5214 1265 SUPERFAMILY L domain-like 677 841 - -
Amo13g5214 1265 ProSitePatterns Protein kinases ATP-binding region signature. 946 968 IPR017441 GO:0005524
Amo13g5214 1265 SUPERFAMILY Protein kinase-like (PK-like) 273 569 IPR011009 -
Amo13g5214 1265 Gene3D Ribonuclease Inhibitor 675 856 IPR032675 -
Amo13g5214 1265 Gene3D Phosphorylase Kinase; domain 1 263 369 - -
Amo13g5214 1265 Gene3D Phosphorylase Kinase; domain 1 909 1016 - -
Amo13g5214 1265 SUPERFAMILY L domain-like 37 209 - -
Amo13g5214 1265 SUPERFAMILY Protein kinase-like (PK-like) 920 1215 IPR011009 -
Amo13g5214 1265 PANTHER BNAA08G11770D PROTEIN 13 608 IPR031048 GO:0004675|GO:0005102|GO:0006468
Amo13g5214 1265 Gene3D Transferase(Phosphotransferase) domain 1 371 588 - -
Amo13g5214 1265 Gene3D Transferase(Phosphotransferase) domain 1 1017 1234 - -
Amo13g5214 1265 Gene3D Ribonuclease Inhibitor 30 213 IPR032675 -
Amo13g5214 1265 PANTHER BNAA08G11770D PROTEIN 661 1265 IPR031048 GO:0004675|GO:0005102|GO:0006468
Amo13g5214 1265 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1063 1075 IPR008271 GO:0004672|GO:0006468
Amo13g5214 1265 ProSitePatterns Serine/Threonine protein kinases active-site signature. 417 429 IPR008271 GO:0004672|GO:0006468
Amo13g5214 1265 Pfam Leucine rich repeat 743 803 IPR001611 GO:0005515
Amo13g5214 1265 Pfam Leucine rich repeat 124 183 IPR001611 GO:0005515
Amo13g5214 1265 ProSiteProfiles Protein kinase domain profile. 940 1219 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g5214 Amo-Chr13 152082864 152093632 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g5214 13 591 Receptor kinase-like Gene Family AT4G33430 64.650 0.0 776
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Amo13g5214 Pkinase 3e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g5214 K13416 - sind:105169199 919.072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g5214 13 152082864 152093632 Amo13g5214 13 152082864 152093632 ECH