Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g5199 ATGTCTCACTTTGGAAGGTCAGGACCTCCGGACATCTCCGACACCTACTCCCTCCTCGTACTTAACATCACTTTCCGCACAACCGCCGACGACCTCTTTCCTCTCTTTGACAAGTATGGCAAGGTCGTTGACATCTTCATCCCCAAAGATCGAAGGACTGGCGAGTCCAGGGGTTTTGCCTTTGTGCGTTACAAGTATGCCGATGAGGCTCAGAAGGCCGTCGAAAGGCTTGACGGAAGAATGGTTGATGGTCGGGAAATAACTGTCCAATTTGCAAAATATGGCCCCAATGCGGAGCGCATTCACAAAGGAAGGATTATTGAATCAATGCCAAGAACAAGGCATAGGTCAAGGAGCCGCAGCCCAAGGAGAAGGTACCGTGATGATTACAGAGACAGGGATTACCGTAGGAGAAGTCGTAGCAGAAGTTATGATAAGTATGAACGTGACCGGTACCGTGGGAGGGACAGAGATTATCGTCGTCGAAGCAGAAGCCGCAGTGCCAGCCCTGATTACAAGAGTCGAGGGAGGGGGCGCTATGATGATGATGATGATGATCGTCGTAGTAGAAGCCGGAGCCGATCGGTGGATAGCCGCTCCCCTGCACATAGTCCTAGTCCTCGAAGGAGTCCTTCACCCCGCAGGAGTATGTCTCCTGAAAGGAGTGCATCCCCAAGAAGTCCTAGAGGTGAAAGTCCTGATAATCGTAGCCGTGATGGACGATCTCCCTCACCTCGCAGTGTCTCACCACGTGGTCGCCCTGATGCTTCGCGAAGCCCATCCCCTCGGAATTCAAATGGTGATGCGTAA 810 0.5235 MSHFGRSGPPDISDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPKDRRTGESRGFAFVRYKYADEAQKAVERLDGRMVDGREITVQFAKYGPNAERIHKGRIIESMPRTRHRSRSRSPRRRYRDDYRDRDYRRRSRSRSYDKYERDRYRGRDRDYRRRSRSRSASPDYKSRGRGRYDDDDDDRRSRSRSRSVDSRSPAHSPSPRRSPSPRRSMSPERSASPRSPRGESPDNRSRDGRSPSPRSVSPRGRPDASRSPSPRNSNGDA* 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g5199 269 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 1 268 - -
Amo13g5199 269 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR SC35 1 268 - -
Amo13g5199 269 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 94 IPR000504 GO:0003723
Amo13g5199 269 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 88 IPR000504 GO:0003723
Amo13g5199 269 SMART rrm2_1 17 90 IPR003954 GO:0003676
Amo13g5199 269 MobiDBLite consensus disorder prediction 198 230 - -
Amo13g5199 269 MobiDBLite consensus disorder prediction 102 269 - -
Amo13g5199 269 MobiDBLite consensus disorder prediction 123 197 - -
Amo13g5199 269 SUPERFAMILY RNA-binding domain, RBD 8 102 IPR035979 GO:0003676
Amo13g5199 269 SMART rrm1_1 17 90 IPR000504 GO:0003723
Amo13g5199 269 Gene3D - 4 104 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g5199 Amo-Chr13 151914940 151918693 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g5199 13 92 Eukaryotic Initiation Factors Gene Family AT3G11400 35.000 1.36e-09 55.8