Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g5197 ATGGATTCTGCAATCTCCGTCACTACACCGGCGCAGATGGCACTCTTCAAGGCTCTCCACCGCCACTTCGCCGCCACGGCTCCTCATCGCCTTCCTCTTCTCCGCCGCAGCCTCAAATGCGCAGTCAATTCCTACGCCTCCCGCCACATTCCGAGCTCACCCGCGGTTTTCAGTTTCTCGCCGTCGCTCAGTGCCTTCCGCGTGCTGCTTCCGCCGCGACCTCCGTGCCGTTTACGGTGCGTTTCAAGCTCCGTCGCTTCCTTCGCTTCTGAAGCCGGCGGCGGAGGCTTCGGCGGAGCCGGAACTGGCGGCGAAGGAGGAGGAGGAGGCGGCGGCGGCGAGTCTGGAGACGGTAGCGTGAAGTTAGTTGGAGACGCGGCTCAGGAGGTTTCGGCGCTTTCGCCTGATGTGATCATTCTCGATGTTTCGGGAATGACGTGCGGTGGATGTGCTGCGACTGTAAAGAGGATTCTGGAAAGTCGTCCCCAAGTGTCATCTGCTAGTGTGAATCTAACTACAGAGACAGCAATAGTTTGGCCTGTATGTGAAGCGAAAAAAGCACCAAATTGGCAGAAGCATTTAGGGGAGGCACTTGCAGAGCATTTGACTAACTGTGGATATAGCTCCAGCCTTCGAGACTCGGGAAGAGACAATTTCATCCAAATTTTTGAAAGAAAGATGGAGGAAAAGCGCAAACAATTAAGACAAAGTGGTCGCGAGCTAGCTGTTTCTTGGGCTCTTTGTGCTGTTTGTCTTGTTGGCCATCTCTCTCATTTCTTTGCAGCTAGGGCACCGTGGATTCATGCATTTCATTCTGTTGGATTTCATGTGTCACTGTCTTTGTTTACATTGCTTGGTCCTGGTCGCCAGCTTATCTTAGATGGACTAAAAAGCCTTCTTAAAGGGGCACCAAACATGAACACCTTAGTTGGTCTTGGGGCCTTGTCATCATTTACAGTCAGTTCATTTGCTACGCTGCTACCAAAATTGGGTTGGAAAGCTTTCTTTGAGGAACCAATTATGCTGATTGCATTTGTCTTGTTAGGAAGGAATCTTGAGCAGAGAGCAAAAATTAAAGCAACAAGTGATATGACAGGACTTCTTAGTTTACTACCATCAAAAGCCCGCCTTCTTGTTAATAATGGCAAAACAGAAGTTGACTCAATTGTTGAAGTTCCTTCTGACAGTCTTTCTGTGGGAGACCAAATTATTGTGTTGCCTGGAGATCGTATCCCAGCAGATGGAATTGTCAGATCTGGTAGAAGCACTGTAGATGAGTCAAGTTTCACCGGTGAGCCACTTCCAGTAACAAAATTACCAGGGAGTGATGTTGCAGCTGGAAGTATAAATCTTAATGGAACTCTCACAATGGAAGTAAGGAGACCAGGTGGTGAGACTGCTATGGGGGACATTGTACGTCTCGTTGAAGAGGCACAAAGCAGGGAAGCTCCAGTACAGAGATTGGCTGATAAGGTGGCTGGACACTTCACTTATGGGGTGATGGCAGTCTCTTTCACCACTTTTACATTTTGGAGTCTATTTGGCAAACATGTTTTACCTACTGCTTTATACCAAGGAAGTGCAGTTTCATTGGCCCTGCAGCTTGCTTGCAGTGTTCTGGTTATTGCTTGTCCATGTGCACTCGGATTAGCCACACCTACTGCTGTGCTGGTTGGAACTTCTTTGGGGGCTACAAGAGGTTTGCTGTTGCGTGGTGGAAACATTCTAGAGAAGTTTGCCATGGTAGATACAGTTGTATTTGACAAAACAGGAACCCTTACAGTTGGTCGACCTGTTGTGACAAAGGTTATTGCTCCTTCATGTGAACAAAATGCAAATTCAAGCCAAGCAGAAGAGAATACATGGTCTGATGTCGAAGTTTTGAGGTTAGCAGCTGCAGTAGAATCGAATTCAGTACATCCAGTTGGGAAAGCTATTGTGGATGCTGCTCAGAAAGTTAATTGTACTAACGCTAAGGTTGCAGATGGAACATTCCTTGAAGAACCTGGTTCTGGTGCAGTAGCAACTGTTGATAACAAAAAGGTCTCTGTTGGGACATTGGATTGGATCACCAGGCATGGGGTTAGCAGCAAGATACATCAAGAATTGGAGGATTTTAAAAATCAATCTGTTGTCTATGTTGGAGTAAATGATACTCTAGCTGGCCTTATTTATTTTGAAGATGAGATAAGGGAAGATGCAAAACAAGTTGTTGATCAATTGTCTAAGCAAGGTATTGGAGTATACATGCTGTCTGGAGACAAAAGGAATGCAGCTGAGCATGTTGCATCCCTTGTTGGAATCTCTAAAGAGAAGGTTCTATCTGGAGTGAAACCAGATGGGAAAAAAAAGTTCATAAATGAACTACAGAAAGATCAGAAGATTGTAGCTATGGTTGGTGATGGAATTAATGATGCAGCTGCCCTGGCCTCTTCACATATTGGTATCGCATTAGGTGGAGGTGTTGGAGCTGCTAGTGAGGTGTCTTCTATTGTATTGATGCGCAACCAGCTCTCACAGTTAGTTGATGCTTTGGAGCTCAGCAGGCTAACCATGAATACTGTAAAACAAAATCTTTGGTGGGCCTTCATATACAACATTGTAGGGATTCCAATTGCTGCTGGAGTGTTATTCCCTATAAATGGAACCATGCTGACTCCATCAATTGCTGGGGCTCTCATGGGGTTGAGTTCCATCGGTGTAATGACCAACTCGTTACTTTTAAGATTCAGATTTTCTGCAAAGCAGAAACAAATACATGGCATGTTGCCGAAGACCAAAATCTATGCAGATTCTGACCTGGAAAACCAAAACCAGAAACTGAAATACCGGTATTAG 2838 0.4591 MDSAISVTTPAQMALFKALHRHFAATAPHRLPLLRRSLKCAVNSYASRHIPSSPAVFSFSPSLSAFRVLLPPRPPCRLRCVSSSVASFASEAGGGGFGGAGTGGEGGGGGGGGESGDGSVKLVGDAAQEVSALSPDVIILDVSGMTCGGCAATVKRILESRPQVSSASVNLTTETAIVWPVCEAKKAPNWQKHLGEALAEHLTNCGYSSSLRDSGRDNFIQIFERKMEEKRKQLRQSGRELAVSWALCAVCLVGHLSHFFAARAPWIHAFHSVGFHVSLSLFTLLGPGRQLILDGLKSLLKGAPNMNTLVGLGALSSFTVSSFATLLPKLGWKAFFEEPIMLIAFVLLGRNLEQRAKIKATSDMTGLLSLLPSKARLLVNNGKTEVDSIVEVPSDSLSVGDQIIVLPGDRIPADGIVRSGRSTVDESSFTGEPLPVTKLPGSDVAAGSINLNGTLTMEVRRPGGETAMGDIVRLVEEAQSREAPVQRLADKVAGHFTYGVMAVSFTTFTFWSLFGKHVLPTALYQGSAVSLALQLACSVLVIACPCALGLATPTAVLVGTSLGATRGLLLRGGNILEKFAMVDTVVFDKTGTLTVGRPVVTKVIAPSCEQNANSSQAEENTWSDVEVLRLAAAVESNSVHPVGKAIVDAAQKVNCTNAKVADGTFLEEPGSGAVATVDNKKVSVGTLDWITRHGVSSKIHQELEDFKNQSVVYVGVNDTLAGLIYFEDEIREDAKQVVDQLSKQGIGVYMLSGDKRNAAEHVASLVGISKEKVLSGVKPDGKKKFINELQKDQKIVAMVGDGINDAAALASSHIGIALGGGVGAASEVSSIVLMRNQLSQLVDALELSRLTMNTVKQNLWWAFIYNIVGIPIAAGVLFPINGTMLTPSIAGALMGLSSIGVMTNSLLLRFRFSAKQKQIHGMLPKTKIYADSDLENQNQKLKYRY* 946
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g5197 945 Gene3D - 137 214 - -
Amo13g5197 945 ProSiteProfiles Heavy-metal-associated domain profile. 137 211 IPR006121 GO:0046872
Amo13g5197 945 CDD HMA 140 210 IPR006121 GO:0046872
Amo13g5197 945 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 625 880 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Amo13g5197 945 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 344 611 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Amo13g5197 945 Coils Coil 220 240 - -
Amo13g5197 945 SUPERFAMILY HAD-like 584 905 IPR036412 -
Amo13g5197 945 Pfam Heavy-metal-associated domain 140 207 IPR006121 GO:0046872
Amo13g5197 945 SUPERFAMILY HMA, heavy metal-associated domain 138 181 IPR036163 GO:0046872
Amo13g5197 945 SUPERFAMILY Calcium ATPase, transduction domain A 388 475 IPR008250 -
Amo13g5197 945 TIGRFAM ATPase-IB_hvy: heavy metal translocating P-type ATPase 306 908 IPR027256 GO:0006812|GO:0016021|GO:0019829
Amo13g5197 945 CDD P-type_ATPase_Cu-like 239 910 - -
Amo13g5197 945 Pfam haloacid dehalogenase-like hydrolase 582 811 - -
Amo13g5197 945 PRINTS P-type cation-transporting ATPase superfamily signature 744 754 - -
Amo13g5197 945 PRINTS P-type cation-transporting ATPase superfamily signature 799 818 - -
Amo13g5197 945 PRINTS P-type cation-transporting ATPase superfamily signature 425 439 - -
Amo13g5197 945 PRINTS P-type cation-transporting ATPase superfamily signature 722 733 - -
Amo13g5197 945 PRINTS P-type cation-transporting ATPase superfamily signature 586 600 - -
Amo13g5197 945 PRINTS P-type cation-transporting ATPase superfamily signature 822 834 - -
Amo13g5197 945 PANTHER ATP7, ISOFORM B 73 910 - -
Amo13g5197 945 MobiDBLite consensus disorder prediction 99 120 - -
Amo13g5197 945 ProSitePatterns E1-E2 ATPases phosphorylation site. 588 594 IPR018303 -
Amo13g5197 945 SFLD Haloacid Dehalogenase 569 849 - -
Amo13g5197 945 TIGRFAM ATPase-IB1_Cu: copper-translocating P-type ATPase 288 909 - -
Amo13g5197 945 SUPERFAMILY Calcium ATPase, transmembrane domain M 337 884 IPR023298 -
Amo13g5197 945 Gene3D - 597 730 IPR023299 GO:0000166
Amo13g5197 945 TIGRFAM ATPase-IB2_Cd: cadmium-translocating P-type ATPase 338 891 - -
Amo13g5197 945 ProSitePatterns Heavy-metal-associated domain. 142 171 IPR017969 GO:0046872
Amo13g5197 945 Gene3D - 356 479 - -
Amo13g5197 945 Pfam E1-E2 ATPase 370 564 - -
Amo13g5197 945 Gene3D - 577 849 IPR023214 -
Amo13g5197 945 SFLD p-type atpase 569 849 IPR044492 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g5197 Amo-Chr13 151894188 151906598 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g5197 297 909 Primary Pumps ATPases AT1G63440 39.650 9.40e-125 401
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g5197 K17686 - gmx:100796210 1445.25