Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g5191 ATGGCGGAGCGTTCTTCCTCTTTTGGACTTGGTCCTCGATTAGATCTTCAGCAACTGCAGTTTGAAGCACAGCATCGGTGGTTGCGCCCTGCAGAAATATGTGAAATTCTTCGTAACTATCGTATGTTTCATATCACATCAGAACCACCAAACAGGCCACCAAGTATGGTTCTAAAATGTGTTGCTCATAAATTTATTGCTAAATTCTCATCACATGTACTTAACACATGTGTGGTGATTGCAGGTGGTTCGCTTTTTCTTTTTGATCGGAAGGTTTTGAGATACTTCAGAAAGGATGGACATAATTGGAGAAAGAAAAAGGATGGAAAGACTGTGAAGGAAGCTCATGAAAAGTTGAAGGTGGGAAGTGTTGATGTGTTACACTGCTACTATGCCCACGGAGAAGAAAATGAAAATTTTCAGAGGCGTAGCTATTGGATGCTTGAACAGGATATGATGCATATAGTATTTGTCCACTATTTGGATGTTAAGGTTAACAAGACCAATATCGGTAGAAATATTGATACAGATGAGGCTATGTCAGAATCCCAGAAGGGCAGTTCTGTGTTATCTGGCTTCCCCACAAGTTATAACAGCATGCCTTCTCGAAGTACAGATTCCATGAGTCCGACTAGCACTTTGACGTCATTATGTGAAGATGCTGATTCTGAGGATATTCGTCAAGCAAGTTCTGGAATGCACTCGTTTGGCAACTCTTTGGGGAGTGGTCAGGCAATGGATAGCATTGATACTTGTTCAAATAGATCATATTTTATGCTTCCCATTTCAGGTGATCATGGACAATCAACAATTTCTGTAACAGACTACATTCCACATGTCCAAGGGGATACATCTAGATTAGGTATTACTGCTTACATTGAGGACCAAAAATCACATGTCATGCCATTAAGGGACACTATCACAGAGCAATCTGTTGGATTGTATACACCTTGTTCTTCCATTTCATCCGGTTCAATGGGAAGCACCCTTGAACAAGAAAAAGCTGTTCCTGAGAATCTCTACGGATCTAAAAGTGGCCTCAATGAGGACTCAAGGGGTTCTCAGTCTACCCAGTCAAATTGGCAGATTACTTTTGATGAGAATACTGGACCTTTGCCAAGATGGAGCCTAACCGAATCGTTGGGTTTGGAATTTGAATCTGATTATAGCATGGCTTTATTTGGGAGTGAAACTGATAATGCAATTCCAGAGATTTGCCCTGACTTGTTCACTTCTAATGGAGAGCTAAAAGAGCAACCTGTGCAACAGAAGTTCCCAAAGCAGTCTACAGATGCACAATCTCAGCATGCACCAAGATCCGACAGTGAATATGAACTTCCTCGGGAGGATAGTACTGGCTATTCCTTGAATGCAAAGCATGCATTACTTGATGGAGAGGAGAACCTGAAGAAGGTTGATAGCTTCTCAAGGTGGATTACTAAAGAACTTGGAGAGGTGGATGATCTGCATCTGCAGTCTTCCCCTGGTATTTCATGGAGCACAGATGAGTGTGGGCATGTAATAGATGATACATCATTGAACCTGTCCTTATCCCAAGATCAGTTGTTCAGCATAAGTGATTTTTCACCTAAATGGGCTTATGCAGATTCCGAGATTGAGGTGTTGATTATTGGAGCATTTTTGAAGAGTCAACTGGAGGTGGAAGCCTGTCACTGGTCCTGTATGTTTGGTGAAGTGGAGGTTCCTGCTGAGATTTTAGCCAATGGAATTATGTGCTGTCAAGCTCCACCTCATCAGGTTGGACGTTTCAGAGAGGGATTTGCTAGGAATGTAGATTTTGCAGATTTTTTCTACAGTTCAACTGAAATGATGCTTCATTTGCGACTTGATGAGTTACTTTCTTCGAAATCAGTGCTATCTACTAATCAAGATTTTGAGGGTTATATGGAGACAAGAAACTTAATTTTTAAGCTCATCTCACTTAAAGAGGAAGAGGAATATTCACATAAGGAAGAGGCAACTGCAGGGTTGAGTGTATCACAACACAAATTGGAGGAGCATGTGTTTCACAGGAAGATTAAAGAGAAGCTCTACTCATGGCTTCTTCACAAGGTAACTGAAGGTGGTAAAGGGCCAAATGTATTAGACAAGGATGGTCAGGGTGTGTTACATTTAGTTGCTGCTCTTGGTTATGATTGGGCAATAACTCCAGTTATAACTGCTGGGGTTAATATCAACTTCCGTGATGTGAATGGATGGACAGCTTTACATTGGGCTGCATCCTGTGGCAGAGAGCGAACAGTTGCTGTCCTTGTCTCCATGGGTGCAGCAGCTGGAGCATTGACAGATCCAAGTCCAGCATTTCCTTCTGGTAGAACAGCTGCTGATCTTGCTTCTAGCAATGGACATAAAGGAATCTCTGGTTTTCTTGGAGAGTCATTATTAACTAGCCACCTTGCGTCACTTACAATGGATGATCCAAGTGAAGATGGCAGGAATAAAACTTTAGGTGGGAAAGCAGTGCAGACAGCTTCGGAGCGAAGTGCAACACCTCTACTTTATGGTGATGTATCAGATACTCTCTGCCTTAAGGATTCTCTTTCTGCTGTCCGTAATGCTACACAAGCCGCTGATCGCATACATCAAGTATTTAGGATGCAGTCATTTCAGAGGAAGCAGTTAGCTCAGTGTGAAGACGATGATGAGTTTGGATTGTCAGATCAACAGGTTCTTTCCTTTATAGCTTCTAGGGCTTGCAAATCTGGACAAGGAGAGGGTTTAGTGAATGCTGCTGCAACACAAATTCAGAAAAAATTTCGTGGTTGGAAGAAGAGAAAAGAATTCCTGATCATTCGCCAAAGAGTTGTCAAAATCCAGGCCCACGTAAGAGGTCACCAGGTAAGGAAGCAATACAAATTAATCTGGTCTGTTGGAATCCTAGAGAAGGTCATATTACGCTGGAGACGTAAGGGCAGAGGCTTACGTGGATTCCGACCAGATACCCTTAACATGGTCCCCAACCCACCAAGCAATCCTTCACAAGAGGATGACTATGATGTTCTCAAAGAAGGAAGGAAGCAAAGTGAAGAAAGGTTCCAAAAAGCCCTTTCAAGGGTGAAATCCATGGTCCAGTACCCGGAGGCACGTGCTCAATACCGGCGGGTGCTGAATGTAGTAGAGGACTTTCGTCAAACCAAGGAATATACCAATTCGGAAGACACTGTTGATGGGGTGGCGGATTTGATTGATATTGATATGCTTTTGGACGATGAGAACTTCTTGCCTATAGCATATGATTGA 3261 0.4256 MAERSSSFGLGPRLDLQQLQFEAQHRWLRPAEICEILRNYRMFHITSEPPNRPPSMVLKCVAHKFIAKFSSHVLNTCVVIAGGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHEKLKVGSVDVLHCYYAHGEENENFQRRSYWMLEQDMMHIVFVHYLDVKVNKTNIGRNIDTDEAMSESQKGSSVLSGFPTSYNSMPSRSTDSMSPTSTLTSLCEDADSEDIRQASSGMHSFGNSLGSGQAMDSIDTCSNRSYFMLPISGDHGQSTISVTDYIPHVQGDTSRLGITAYIEDQKSHVMPLRDTITEQSVGLYTPCSSISSGSMGSTLEQEKAVPENLYGSKSGLNEDSRGSQSTQSNWQITFDENTGPLPRWSLTESLGLEFESDYSMALFGSETDNAIPEICPDLFTSNGELKEQPVQQKFPKQSTDAQSQHAPRSDSEYELPREDSTGYSLNAKHALLDGEENLKKVDSFSRWITKELGEVDDLHLQSSPGISWSTDECGHVIDDTSLNLSLSQDQLFSISDFSPKWAYADSEIEVLIIGAFLKSQLEVEACHWSCMFGEVEVPAEILANGIMCCQAPPHQVGRFREGFARNVDFADFFYSSTEMMLHLRLDELLSSKSVLSTNQDFEGYMETRNLIFKLISLKEEEEYSHKEEATAGLSVSQHKLEEHVFHRKIKEKLYSWLLHKVTEGGKGPNVLDKDGQGVLHLVAALGYDWAITPVITAGVNINFRDVNGWTALHWAASCGRERTVAVLVSMGAAAGALTDPSPAFPSGRTAADLASSNGHKGISGFLGESLLTSHLASLTMDDPSEDGRNKTLGGKAVQTASERSATPLLYGDVSDTLCLKDSLSAVRNATQAADRIHQVFRMQSFQRKQLAQCEDDDEFGLSDQQVLSFIASRACKSGQGEGLVNAAATQIQKKFRGWKKRKEFLIIRQRVVKIQAHVRGHQVRKQYKLIWSVGILEKVILRWRRKGRGLRGFRPDTLNMVPNPPSNPSQEDDYDVLKEGRKQSEERFQKALSRVKSMVQYPEARAQYRRVLNVVEDFRQTKEYTNSEDTVDGVADLIDIDMLLDDENFLPIAYD* 1087
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g5191 1086 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 1 6 70 - -
Amo13g5191 1086 MobiDBLite consensus disorder prediction 178 215 - -
Amo13g5191 1086 Pfam Ankyrin repeats (3 copies) 710 793 IPR002110 GO:0005515
Amo13g5191 1086 SUPERFAMILY Ankyrin repeat 694 797 IPR036770 -
Amo13g5191 1086 Gene3D Immunoglobulins 518 607 IPR013783 -
Amo13g5191 1086 Pfam IQ calmodulin-binding motif 917 935 IPR000048 GO:0005515
Amo13g5191 1086 Pfam IQ calmodulin-binding motif 940 959 IPR000048 GO:0005515
Amo13g5191 1086 ProSiteProfiles Ankyrin repeat region circular profile. 738 763 - -
Amo13g5191 1086 SMART iq_5 937 959 IPR000048 GO:0005515
Amo13g5191 1086 SMART iq_5 914 936 IPR000048 GO:0005515
Amo13g5191 1086 ProSiteProfiles CG-1 DNA-binding domain profile. 16 169 IPR005559 GO:0003677
Amo13g5191 1086 SMART CG_1_2 19 164 IPR005559 GO:0003677
Amo13g5191 1086 SUPERFAMILY E set domains 525 590 IPR014756 -
Amo13g5191 1086 Gene3D - 915 962 - -
Amo13g5191 1086 ProSiteProfiles IQ motif profile. 938 963 IPR000048 GO:0005515
Amo13g5191 1086 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 82 1086 - -
Amo13g5191 1086 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 6 70 - -
Amo13g5191 1086 MobiDBLite consensus disorder prediction 419 440 - -
Amo13g5191 1086 Pfam CG-1 domain 82 162 IPR005559 GO:0003677
Amo13g5191 1086 Pfam CG-1 domain 22 69 IPR005559 GO:0003677
Amo13g5191 1086 MobiDBLite consensus disorder prediction 419 450 - -
Amo13g5191 1086 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 914 961 IPR027417 -
Amo13g5191 1086 ProSiteProfiles Ankyrin repeat profile. 738 770 IPR002110 GO:0005515
Amo13g5191 1086 ProSiteProfiles IQ motif profile. 916 944 IPR000048 GO:0005515
Amo13g5191 1086 MobiDBLite consensus disorder prediction 985 1004 - -
Amo13g5191 1086 Gene3D - 674 804 IPR036770 -
Amo13g5191 1086 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 1 82 1086 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g5191 Amo-Chr13 151827404 151834529 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g5191 1 1058 CAMTA Transcription Factor Family AT5G64220 50.827 0.0 993
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Amo13g5191 CG-1 1.2e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g5191 K21596 - gmx:100795682 1534.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g5191 13 151827404 151834529 Amo20g0590 20 7433744 7442516 PCT
Amo13g5191 13 151827404 151834529 Amo10g0325 10 3296581 3304887 PCT
Amo20g0590 20 7433744 7442516 Amo13g5191 13 151827404 151834529 PCT
Amo10g0325 10 3296581 3304887 Amo13g5191 13 151827404 151834529 PCT