Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g5189 ATGACAAGGTTTCAGTTTTACGGAAAAGAATTGAGTGAAACCTCAAAATCAGCTGTAATAATCAAACAAACAGTGTCAGCAATAAAAAAACAAATCAACACGCACAGAGAGAAGAGAAAAAAAGTCAATAAGGGCAACCTACGTATGTATTATCCCCACTTCCCCTATTTGCTGCTTGCAAACACCGAACACTTCTTCTTTCTCTTCACACATACCAAATTCCAGACGTTCTTGGCTTTGTTTCTCTTTGTCTCTCTCCCCCTCAAAGTTGACGGTAGAATTAGAGACGACCCACTTGCTCCTCAGATCTTTCAACTTATTTTTGTTGCACAAAGTTTAGATTTTTTTCGCTCTGTTAGAGGGGTGGTTGGAGGGCATTCTTCAAGTAACTCTGGAAAGGGCAAGAGCCATCAGTCTACAACCAAGTATGGCTATAGCCTTGTTAAAGGGAAAGCAAACCACCCGATGGAGGACTATCATGTAGCGAAATTTGTCCAGTTCAAGGGGCAAGAGCTGGGACTTTTTGCTATATATGATGGACACTTGGGAGATAGCGTACCAGCATATTTACAAAAGCATCTTTTTTCAAATATCTTGGATGAAAAGGACTTTTGGGAAGATCCGTTCATGTCTATTTCTAAAGCTTATGAGACAACAGATCAAGCAATTCTTTCTCACAGTCCTGATTTGGGACGAGGAGGGTCAACTGCTGTGACTGCAATTCTTATAAATAGTCAGAAATTATGGGTAGCCAATGTTGGAGATTCACGAGCAGTTCTGTCAAGGGGAGGGGTGGCTGTACAGATGACTACTGACCATGAACCTAATACTGAGCGGGGCAGCATTGAGAACAGAGGTGGCTTTGTCTCAAACATGCCAGGAGATGTTGCAAGGGTGAATGGGCAGCTTGCAGTTTCGCGAGCATTTGGAGACAGAAACCTCAAAACACATCTGCGATCGGATCCTGACATCCAGTATGCCGATATTAACCCAAATATTGAGCTTTTGATACTTGCTAGTGATGGTCTATGGAAGGTAATGGGAAACCAAGAGGCTGTAGATATTGCAAAAAGGATAAAGGATCCACAAAGGGCAGCCAAACAACTAGCCACTGAGGCATTGAACAGAGACAGTAAAGATGACATTTCATGCATTGTAGTTCGTTTCAAGGGATGA 1176 0.4235 MTRFQFYGKELSETSKSAVIIKQTVSAIKKQINTHREKRKKVNKGNLRMYYPHFPYLLLANTEHFFFLFTHTKFQTFLALFLFVSLPLKVDGRIRDDPLAPQIFQLIFVAQSLDFFRSVRGVVGGHSSSNSGKGKSHQSTTKYGYSLVKGKANHPMEDYHVAKFVQFKGQELGLFAIYDGHLGDSVPAYLQKHLFSNILDEKDFWEDPFMSISKAYETTDQAILSHSPDLGRGGSTAVTAILINSQKLWVANVGDSRAVLSRGGVAVQMTTDHEPNTERGSIENRGGFVSNMPGDVARVNGQLAVSRAFGDRNLKTHLRSDPDIQYADINPNIELLILASDGLWKVMGNQEAVDIAKRIKDPQRAAKQLATEALNRDSKDDISCIVVRFKG* 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g5189 391 PANTHER PROTEIN PHOSPHATASE 2C 117 390 IPR015655 GO:0004722|GO:0006470
Amo13g5189 391 SUPERFAMILY PP2C-like 139 390 IPR036457 -
Amo13g5189 391 SMART PP2C_SIG_2 153 389 IPR001932 -
Amo13g5189 391 Pfam Protein phosphatase 2C 151 382 IPR001932 -
Amo13g5189 391 ProSiteProfiles PPM-type phosphatase domain profile. 142 389 IPR001932 -
Amo13g5189 391 PANTHER PROTEIN PHOSPHATASE 2C-LIKE PROTEIN 117 390 - -
Amo13g5189 391 CDD PP2Cc 142 389 IPR001932 -
Amo13g5189 391 Gene3D - 125 391 IPR036457 -
Amo13g5189 391 SMART PP2C_4 138 387 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g5189 Amo-Chr13 151810146 151814430 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g5189 116 390 PP2C-type Phosphatase Gene Family AT1G22280 71.174 1.31e-141 402
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g5189 K17506 - gmx:100801722 491.115
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g5189 13 151810146 151814430 Amo20g0591 20 7444837 7448456 PCT
Amo13g5189 13 151810146 151814430 Amo10g0324 10 3290200 3293881 PCT
Amo20g0591 20 7444837 7448456 Amo13g5189 13 151810146 151814430 PCT
Amo10g0324 10 3290200 3293881 Amo13g5189 13 151810146 151814430 PCT