Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g5187 ATGACCTTCCCTGACTATTATGAGCCTAGTTCTATTGCTGTTGAATCTAATAATAATACCATTGAGGAGGAGGGTATATTTTTGACATGGAAGGATTTGCATGTGAGTGTTCCAAGTGGAAAGAAATATGCATATGGTCGGAAACCAATATTGAAGGGCCTAACTGGCTATGCCAAGCCAGCCCAACTCTTGGCTATTATGGGTCCTTCTGGCTGCGGCAAGTCCACCCTTCTTGATGCCTTAGCTGGAAGATTGGGTTCAAACACAAAGCAAACAGGGAAGATTCTGATTAATGGTCGGAAAGAAGCACTCGCTTATGGAACATCGGCATACGTAACACATGATGATGCCGTATTAGCAACACTGACAGTTGGAGAAGCAGTGAACTACTCAGCACAGCTTCAATTTCCAAACTCAATGTCGAAGAGAGAGAAGGAAGAGAGAGCAATCTCTACAATCACCCAAATGGGTCTGCAAGATGCCACCAACACAATGATTGGAGGGTGTTTGTCGAAAGGCCTCAGTGAAGGACAAAAGAGGAGACTCAGCATTTGCATTCAGATTCTCACCAGCCCAAGTCTTCTCCTTCTTGATGAACCAACTAGTGGACTTGATAGTGCTGCTTCCTACTATGTCATGACTAGAATTGCAAGTCTAAAGGCAAGAGATGGCATCAAAAGAACCATTGTTGCATCCATTCATCAACCTAGTAGTCAGCTTTTTCAACTCTTTCAAGACCTTTGCCTTCTCTCTTGCGGTGAGACTGTATATTTTGGCCCAACTTCTGCAGCTACAAAGTTTTTTGCTTCACGTGGCTTTCCTTGTCCACCTCTCCACAACCCTGCTGACCATTTCTTGAGGATCATAAACAAGGATTTCAAAATGGTCGAAGAAGACTGTTTCCACATAGGAATGAAGAATGAAGATACCTTTAAGATCCTTGTGAAGTTTTATTCATCATCTAAAATTAGTAAGCAAGTCCGGAAGGAAGTAGCAACAATATGTGAAAAAGAATATGGTTTTGTGGAGAGGAAAAGAAGACAAGCTTCGTTTATAACTCAGTGCAACATTCTTTTGAGAAGATCTTCGCTACACTTATTTCGTGATGTAAGCAATTACTGGTTACGCATAGCAATCTTTACCATAGCAGCTCTAAGTCTGGGCACTATCTTCTTAGATGTCACTTCAAGTGATGCATCAATTCAGGCTAGAGGATCTCTGGTCTCTTTTGTTGCATCAGTCCTAACTTTCATAACCCTTCTTGGTGGATTCCCCCCATTTGTGGAGCAAATGAAGGTAAAGAATTGCTCTCAACAATGCCTTGAACGCTTCATGTACTTCTCTTTTGTGTTATTTGCATGTGTGATGTGGGTTGAAAGCCTCATGATGGTTGTTTCAAGTGTTTTCTCCAACCCCAACATGGGAATCACAATCTGTGGTGGAATTGTGGGAGTGATGATCCTAACTGCTGGGTTCTATAGGCTGCCAAATGATCTCCCAAAACCATTTTGGAAATATCCCATGTACTTTGTTTCTTTTCATAAGTATGCATTCCAAGGATTGTTCAAGAATGAGTTTCTTGGATTAACGTTGGCTAGAGATCAAGGTGGAGACAGAGGCACCTATATTGGTGATAAAGAGATACTGAGAAATATATGGCAAGTGGAAATGGGACACAATAAGTGGGTTGATCTTGCTATCATGTTTGGGATAATTGTTTTCTATAGGCTCATGTTCTTGGCAATCACCAAGATTAAAGAGAAGATAAAGGCTTGA 1776 0.4139 MTFPDYYEPSSIAVESNNNTIEEEGIFLTWKDLHVSVPSGKKYAYGRKPILKGLTGYAKPAQLLAIMGPSGCGKSTLLDALAGRLGSNTKQTGKILINGRKEALAYGTSAYVTHDDAVLATLTVGEAVNYSAQLQFPNSMSKREKEERAISTITQMGLQDATNTMIGGCLSKGLSEGQKRRLSICIQILTSPSLLLLDEPTSGLDSAASYYVMTRIASLKARDGIKRTIVASIHQPSSQLFQLFQDLCLLSCGETVYFGPTSAATKFFASRGFPCPPLHNPADHFLRIINKDFKMVEEDCFHIGMKNEDTFKILVKFYSSSKISKQVRKEVATICEKEYGFVERKRRQASFITQCNILLRRSSLHLFRDVSNYWLRIAIFTIAALSLGTIFLDVTSSDASIQARGSLVSFVASVLTFITLLGGFPPFVEQMKVKNCSQQCLERFMYFSFVLFACVMWVESLMMVVSSVFSNPNMGITICGGIVGVMILTAGFYRLPNDLPKPFWKYPMYFVSFHKYAFQGLFKNEFLGLTLARDQGGDRGTYIGDKEILRNIWQVEMGHNKWVDLAIMFGIIVFYRLMFLAITKIKEKIKA* 592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g5187 591 Pfam ABC-2 type transporter 443 526 IPR013525 GO:0016020|GO:0140359
Amo13g5187 591 SMART AAA_5 60 261 IPR003593 -
Amo13g5187 591 PANTHER WHITE-BROWN-COMPLEX ABC TRANSPORTER FAMILY PROTEIN 19 434 - -
Amo13g5187 591 PANTHER WHITE-BROWN-COMPLEX ABC TRANSPORTER FAMILY PROTEIN 439 591 - -
Amo13g5187 591 Pfam ABC-2 type transporter 234 293 IPR043926 GO:0140359
Amo13g5187 591 PANTHER ABC TRANSPORTER G FAMILY MEMBER 11 19 434 - -
Amo13g5187 591 PANTHER ABC TRANSPORTER G FAMILY MEMBER 11 439 591 - -
Amo13g5187 591 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 28 277 IPR003439 GO:0005524
Amo13g5187 591 Gene3D - 38 269 IPR027417 -
Amo13g5187 591 Pfam ABC transporter 52 202 IPR003439 GO:0005524
Amo13g5187 591 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 42 269 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g5187 Amo-Chr13 151779160 151782924 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g5187 43 212 Calmodulin-binding Proteins AT2G36910 27.778 6.62e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g5187 K05681 - adu:107481533 1123.61