Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g5184 ATGGATTCCCATAATGAAGCAATTCCACATGCTCCTACTAGGAGTGATTCTGATGATGATGTCATAGTAACCGTCATGGAAGCTTTGAACATTTCAAGAAGAAGTAATAGTGGTGGGAGAGAAGAAGAGGTTCCAATATACATGACATGGAAGGATATATGGGTGAGAGCTTGGGTGGGAAAGAATGAGAGCAAATCAATCCTTGAGGGTCTGACTGGTTATGCCAAGCCAGGCCAGCTTTTGGCCATTATGGGTCCTTCTGGATCTGGCAAGTCTACTCTTCTTGATGCTTTGGGAGGGAGATTAAGTTCAAACACAAGACAAACAGGGGAGATTCTAATCAATGGTCACAAGCAATCATTGGCTTATGGAACCACGGCATATGTGACACAAGATGATAGCTTAATAACATCATTAACAGTGAGAGAAGCAGTGTACTATTCAGCTCAGCTTCAGTTACCTGATTCCATGTCAAAGGCAGAGAAGAAAGAGAGAGCAGAGTTCACAATAAGAGAGATGGGTTTGCAAGATGCCATCAACACTAGAATTGGTGGCTGGGGTTGCAAAGGAATCAGCGGTGGTCAGAAGAGACGTGTAAGCATCTGCATTGAGATATTAACACGCCCAAGGCTCTTGTTTCTTGATGAACCAACAAGTGGACTTGACAGTGCTGCCTCTTACTATGTCATGAAAAGAATCAAATCCCTTGATCATAAAGATGGTATTCAAAGGACTATCATAGCGTCAATTCATCAACCAAGTGCTGAAGTTTTCCAATTCTTTGATAATCTCTGTTTGCTCTCTGCTGGAAAAACAGTTTACTTTGGGCCTGCTTCTGATGCAATTCAGTTTTTCGCTTCCAATGGTTTTCCTTGTCCTGCTCTTCAAAACCCCTCAGATCATATGCTAAAAACTATAAACAAGGACTTCGATCAGGAAAATGAGCTGGGTCCTGATGATGGTGGGAATGGAATCATACCAACAGAAGAAGTAATCCGGATTCTTGTAAACTCATATAACTCATCTGAGATGAACCAACAAGTTCAAGCTGAAGTAGCAATGCTTTCTGAAACGGAAAGTATTTGCCAAGACAAGAAAAGAAGTCATGCTGGGTTTATTAGTCAGTGCATTGTTCTGAGCAAAAGATCATTCATAAACATGTTTCGTGATTTAGGCTATTACTGGATACGCCTTGTCGCATATATGGGGATGGCTATTTGTTTAGGAACTGTCTTCTATGATATAAGAACCACCAATAACTCAATTAAGGACAGAGGTTCATTTCTTACATTTGTGTCTACATTCATGACTTTCATGAGCATCGGTGGATTCCCTTCCTTTGTAGAAGATATGAAGGTATTTGAACGAGAAAGGCTAAATGGGCATTATGGTGTGTGCGCCTTTGTAATTGGAAACACATTTTCCGGCATCCCATTCGTATTACTAGTTTCATTGATTCCGGGAATAATTGCATATTACCTAGCTGGCCTTCAACATGGATACGAGCACGTTCTTTACTTCTTGAGCGTCTTGTTATCTTGTGTTATGTTAGTGGAAAGCCTCATGATGATAATTGCTGCCATAGTCCCAAACTACCTATTGGGAATCATGACAGGTTCTGCAATCCAAGGACTCATGATTCTCCTTGCTGGCTTCTTTAAATTGCCCAGTGACATTCCTAGGCCACTTTGGAAATACCCTTTGCACTACATCGCTTTCCATCGATATGCCTTTCAAGGATTGTTCAAGAATGAATTTCAAGGCCTAAAGTTTGGTACCAAAAACAACAATGTTATTACTGGTGAGGAGATTCTGAGGGATACATTTGAAGTGGACAACAGTTACTCAAAGTGGGTTGATCTATCAGTGTTGGTGGGGATGCTTGTTTTGTATCGAGTTCTGTTTTTGGTAATCATTAAGGGTACGGAGAAGGTTAAGCCTTTTGTTGCATCCTTCAAACTGGTGTCTCCCAAGAAAACAATACATGTCATGGAAAATCCAAATGCCACCCCTCCTACCCACGGACACTACCTTCTATAA 2040 0.4108 MDSHNEAIPHAPTRSDSDDDVIVTVMEALNISRRSNSGGREEEVPIYMTWKDIWVRAWVGKNESKSILEGLTGYAKPGQLLAIMGPSGSGKSTLLDALGGRLSSNTRQTGEILINGHKQSLAYGTTAYVTQDDSLITSLTVREAVYYSAQLQLPDSMSKAEKKERAEFTIREMGLQDAINTRIGGWGCKGISGGQKRRVSICIEILTRPRLLFLDEPTSGLDSAASYYVMKRIKSLDHKDGIQRTIIASIHQPSAEVFQFFDNLCLLSAGKTVYFGPASDAIQFFASNGFPCPALQNPSDHMLKTINKDFDQENELGPDDGGNGIIPTEEVIRILVNSYNSSEMNQQVQAEVAMLSETESICQDKKRSHAGFISQCIVLSKRSFINMFRDLGYYWIRLVAYMGMAICLGTVFYDIRTTNNSIKDRGSFLTFVSTFMTFMSIGGFPSFVEDMKVFERERLNGHYGVCAFVIGNTFSGIPFVLLVSLIPGIIAYYLAGLQHGYEHVLYFLSVLLSCVMLVESLMMIIAAIVPNYLLGIMTGSAIQGLMILLAGFFKLPSDIPRPLWKYPLHYIAFHRYAFQGLFKNEFQGLKFGTKNNNVITGEEILRDTFEVDNSYSKWVDLSVLVGMLVLYRVLFLVIIKGTEKVKPFVASFKLVSPKKTIHVMENPNATPPTHGHYLL* 680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g5184 679 Pfam ABC-2 type transporter 251 306 IPR043926 GO:0140359
Amo13g5184 679 Pfam ABC transporter 70 219 IPR003439 GO:0005524
Amo13g5184 679 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 48 294 IPR003439 GO:0005524
Amo13g5184 679 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 63 286 IPR027417 -
Amo13g5184 679 SMART AAA_5 77 271 IPR003593 -
Amo13g5184 679 Pfam ABC-2 type transporter 375 586 IPR013525 GO:0016020|GO:0140359
Amo13g5184 679 Gene3D - 49 315 IPR027417 -
Amo13g5184 679 PANTHER WHITE-BROWN-COMPLEX ABC TRANSPORTER FAMILY PROTEIN 14 671 - -
Amo13g5184 679 PANTHER ABC TRANSPORTER G FAMILY MEMBER 11 14 671 - -
Amo13g5184 679 ProSitePatterns ABC transporters family signature. 191 205 IPR017871 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g5184 Amo-Chr13 151708313 151713881 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g5184 78 233 Calmodulin-binding Proteins AT2G36910 30.539 6.10e-10 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g5184 K05681 - gmx:100813462 934.48