Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g5180 ATGAGCAAGCTTCTTGATCCCTCAACAGAAAGCCACATAGGCATTACTGAGGGAGAAGGTATAACAATGACATGGGAGAACTTGTGGGTCACTGTTTCTGATGGAAAGAAAACGAAACCAATTCTGGAAGGTCTTACCGGTTATGCACAACCAGGGAGGCTTTTGGCTATAATGGGACCTTCTGGTTGTGGCAAATCCACACTTCTTGATGCCTTATCAGGAAGATTGAGCCCAAACATAAAGCATAAAGGGAAGATTCTAATAAATGGGCACAAACAAGAACTGGCTTATGGAATATCAGGATATGTAACACAAGATGATGCTTTGCTTTCAACTTTAACAGCTCAGGAGACTTTATACTACTCAGCTCAGCTTCAGTTCTCTGATTCCATGCCCATATCAGAGAAGAAGGAAAGAGCTGATGTAACTCTCAGGGAAATGGGTCTGCAAAATGCCATTAACACAAGGGTTGGAGGATGGGGTTCTAAGGGACTCAGTGGGGGACAGAAGAGGAGACTAAGCATCTGCATTGAGATCTTAACACATCCAAGACTCTTGTTTCTTGATGAACCAACAAGTGGACTTGATAGTGCAGCTTCTTATTATGTCATGAGAAGAATTGCTAACCTTGTTCAGAAAGATGGCATTCAAAGGACTATTGTTGCATCTATTCATCAACCTAGTAGTGAAATTTTTGAACTCTTCCATCACCTTTGTCTTCTGTCTTCTGGTAAAACTGTATATTTTGGTCCTGCCTTTGATGCTAATCAGTTTTTTGCTTCAAATGGTTTTCCTTGTCCAACACTCCATAACCCTTCTGATCATTACTTGAGGATCATAAACAAAGATTTTGAACAGGATGCTGAAGAAGGCTTTGGTAGTGGAATAACGGCAGAGGAAGCTATTAATATTCTTGTGAAGTCTTATAGCTTGTCTCAGATTAAAAACAAAGTCAATACAGAAGTGGCAAACATAAACCAAAGTGATTCTGGAGCAGTAGAGAAGAAGAGGGTCCATGCTGACTTCCTGACTCAGTGCCTTGTTCTTATAAGAAGATCTGCACTGAATTATTTCCGCGACTTGAGCAATTACTGGCTGCGCCTTGCTGTGTTTATTGCAATAGCTCTAAGCTTGGGCTCTATCTACTATGATATTGGCTTTGGTGCTGGATCTATTCAGGCTAGAGGATCTCTGCTTACTTTTTTCATTTCCCTTTTGTCTTTCATGACACTTGTTGGTGGATTTGCTCCAATGCTAGAGGAAATCAAGGTATTTGAAAGAGAGAGATTGAATGGACACTATGGAGTTACAGCATTTCTCACAGGGAACACATTTTCTGCTGTTCCATACATGCTAATAGTAACCATGGTTCCGGGAGTAATATCCTATTACCTTTGTGGACTCCACAAAGGACTATTCCACAATGGAGCAGAACACTTGATATACTTTGTATCAGTGCTATTTGCCATAGTTATGTGGGTTGAGAGCCTCATGCTTGTTGTAGGAAGTGTGTCCCCTAACTATGTTATAGGCATGTTCATTGCTGGTGGAGTCCAAGGAATCATGATCCTAGTTTGTGGATTCTATAGGTTACCAAATGATATTCCAAAACCTTTATGGAAATACCCTTTGTATTATCTGTCTTTTCAGAAGTATGCACTCCAAGGGTATTTCAAGAATGAATTTGAAGGCTTAACATTTGTGATTGGTCATAACATGAACATTAGTGGTAGGGAAATACTAAGAGAGACATGGCATGTGGAAATGGGACACTCTAAGTGGCTTGATCTTGGAATCTTGTTTGTAATGATTGTTGTGTACAGAATGCTGTTCTTAGCAATCACTAAGAGCAAGGAGAAGTTGAAGCCTGTTTTTGCTGCTATTACTGCTAGATGTTAG 1899 0.4023 MSKLLDPSTESHIGITEGEGITMTWENLWVTVSDGKKTKPILEGLTGYAQPGRLLAIMGPSGCGKSTLLDALSGRLSPNIKHKGKILINGHKQELAYGISGYVTQDDALLSTLTAQETLYYSAQLQFSDSMPISEKKERADVTLREMGLQNAINTRVGGWGSKGLSGGQKRRLSICIEILTHPRLLFLDEPTSGLDSAASYYVMRRIANLVQKDGIQRTIVASIHQPSSEIFELFHHLCLLSSGKTVYFGPAFDANQFFASNGFPCPTLHNPSDHYLRIINKDFEQDAEEGFGSGITAEEAINILVKSYSLSQIKNKVNTEVANINQSDSGAVEKKRVHADFLTQCLVLIRRSALNYFRDLSNYWLRLAVFIAIALSLGSIYYDIGFGAGSIQARGSLLTFFISLLSFMTLVGGFAPMLEEIKVFERERLNGHYGVTAFLTGNTFSAVPYMLIVTMVPGVISYYLCGLHKGLFHNGAEHLIYFVSVLFAIVMWVESLMLVVGSVSPNYVIGMFIAGGVQGIMILVCGFYRLPNDIPKPLWKYPLYYLSFQKYALQGYFKNEFEGLTFVIGHNMNISGREILRETWHVEMGHSKWLDLGILFVMIVVYRMLFLAITKSKEKLKPVFAAITARC* 633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g5180 632 CDD ABCG_EPDR 20 250 - -
Amo13g5180 632 Gene3D - 22 289 IPR027417 -
Amo13g5180 632 PANTHER WHITE-BROWN-COMPLEX ABC TRANSPORTER FAMILY PROTEIN 16 623 - -
Amo13g5180 632 PANTHER ABC TRANSPORTER G FAMILY MEMBER 11 16 623 - -
Amo13g5180 632 ProSitePatterns ABC transporters family signature. 165 179 IPR017871 GO:0005524
Amo13g5180 632 Pfam ABC-2 type transporter 344 562 IPR013525 GO:0016020|GO:0140359
Amo13g5180 632 Pfam ABC transporter 44 193 IPR003439 GO:0005524
Amo13g5180 632 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 23 268 IPR003439 GO:0005524
Amo13g5180 632 SMART AAA_5 51 244 IPR003593 -
Amo13g5180 632 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 24 257 IPR027417 -
Amo13g5180 632 Pfam ABC-2 type transporter 225 293 IPR043926 GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g5180 Amo-Chr13 151627192 151629796 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g5180 41 250 Calmodulin-binding Proteins AT2G36910 26.852 9.08e-10 60.1