Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g5156 ATGGAAGAAGAAGAGCACGAGGTGTACGGAGGAGAGATCCCTGACGTTGCCGAGATGGAAGGTGACGTTGACATGTCCGCTCCCGACGACGACCCCGAGGTCAAGGAGCTCGACGAAATGAAGCGCCGCCTTAAGGAGATGGAGGAGGAAGCTACGGCTCTTCGCGAGATGCAAGCTAAGGTCGAAAAGGAGATTGGCTCTGTTCAAGATCCTGCTACTGCTGCTGCTTCTCAGGCAAACAAGGAGGAGGCAGATTCTCGATCTGTATTTGTAGGCAATGTTGATTATGCATGCACGCCAGAGGAAGTTCAGCAACACTTTCAATCATGTGGTACAGTGAACAGGGTCACCATCTTGACTGACAAGTTCGGCCACCCTAAAGGTTTTGCTTATGTGGAGTTCGTGGAAGTTGAAGCTGTTCAAGAGGCTCTTGTCTTGAATGAATCGGAGTTACATGGGCGTCAATTGAAGGTCTTGCCTAAGAGGACCAATGTTCCTGGAATGAAACAGTATCGTCCTAGGCGCTATAATCCCTACATGGCATATGGCTTTAGGAGGCCATATCCTCCTCCTTACTTTTACTCTCCTTATGGATACGGGAAGGTTCCTAGGTTTAGAAGGTCAACTCGTTACATGCCATACTACTAG 648 0.4907 MEEEEHEVYGGEIPDVAEMEGDVDMSAPDDDPEVKELDEMKRRLKEMEEEATALREMQAKVEKEIGSVQDPATAAASQANKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEVEAVQEALVLNESELHGRQLKVLPKRTNVPGMKQYRPRRYNPYMAYGFRRPYPPPYFYSPYGYGKVPRFRRSTRYMPYY* 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g5156 215 MobiDBLite consensus disorder prediction 64 85 - -
Amo13g5156 215 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 89 157 IPR000504 GO:0003723
Amo13g5156 215 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 87 163 IPR000504 GO:0003723
Amo13g5156 215 Coils Coil 34 64 - -
Amo13g5156 215 Gene3D - 15 170 IPR012677 -
Amo13g5156 215 PANTHER - 1 213 - -
Amo13g5156 215 CDD RRM_II_PABPs 88 159 - -
Amo13g5156 215 MobiDBLite consensus disorder prediction 1 33 - -
Amo13g5156 215 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 1 213 - -
Amo13g5156 215 SUPERFAMILY RNA-binding domain, RBD 77 185 IPR035979 GO:0003676
Amo13g5156 215 SMART rrm1_1 88 159 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g5156 Amo-Chr13 151408257 151412194 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g5156 84 158 Eukaryotic Initiation Factors Gene Family AT2G36660 34.211 6.09e-09 53.5