Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g5148 ATGAAGAGACTTAGCAGCTCCGATGATTCTTTGGGCGCTCTCATGACAATTTGTCCATCATCAACAACAGAAGAACACAGTCCAAGGAACAAACAGCAGGTGTACGGAAGGGAGTTCCAATCGATGTTGGACGGACTGGACGAAGACGGTTGCATCGAAGAATCGGGGCACCACGGCGAGAAGAAACGGCGCTTAAGCGTGGAACAAGTGAAGGCTTTGGAGAAGAACTTCGAAGTTGAGAACAAGCTGGAACCGGACAGAAAGGTGAAGCTGGCACAAGAACTGGGGTTGCAGCCAAGACAAGTTGCCGTTTGGTTCCAAAACCGCAGAGCCAGGTGGAAAACCAAGCAGTTAGAAAGAGACTACGGCGTTCTCAAAGCCAATTACGAAGCTCTTAAACTCAACTTCGAAAAACTCCAACAAGACAACCAAGCCTTGCATAAAGAGATTAAGGGATTGAAATCAAGGATGCAAGACGAACGCACCGAAAGCGATGCTTCGGTGAAGAAGGAACAAGTGGAGATGATAACAACGCTGCAAGACTCGGAGGAGAACCCTTGCGATCTTGAAACCGCTGCCGCCATTGCTGGATCGGACTCCAACAAGGACCTGAGCTACGATTGCTTCAACAACAACAGCAAGGGCGACGGTGAGGGCGGTGATGGTGTGGGAGGAGCAGCATCGATATCGCTGTTCCCTTGTGGGGACTTGAAAGACGGTTCTTCAGATAGCGATTCAAGCGCGATCTTGAACGAAGAGAATAACAACAGCAGCTGTAGCCCCATGAACAACGCGGCGATATCTTCGTGTGGTGGTGGGGTTCTGCAAAGTTCGAACCTTTTGATGTCTCAGCATGACGAGTCGCCATCATCCATGAGCTGCTTTCAGTTCCAGAAGGCGTACCAGGCCACACAGTACGTGAAGATGGAGGAGCACAACTTCTTCAGTGCAGATGAGACGTGCAATTTCTTCTCCGATGAACAAGCACCAACCCTTCAGTGGTACTGTTCGGAAGAGTGGAGTTGA 1026 0.5 MKRLSSSDDSLGALMTICPSSTTEEHSPRNKQQVYGREFQSMLDGLDEDGCIEESGHHGEKKRRLSVEQVKALEKNFEVENKLEPDRKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKANYEALKLNFEKLQQDNQALHKEIKGLKSRMQDERTESDASVKKEQVEMITTLQDSEENPCDLETAAAIAGSDSNKDLSYDCFNNNSKGDGEGGDGVGGAASISLFPCGDLKDGSSDSDSSAILNEENNNSSCSPMNNAAISSCGGGVLQSSNLLMSQHDESPSSMSCFQFQKAYQATQYVKMEEHNFFSADETCNFFSDEQAPTLQWYCSEEWS* 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g5148 341 Coils Coil 115 163 - -
Amo13g5148 341 MobiDBLite consensus disorder prediction 9 33 - -
Amo13g5148 341 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 1 333 IPR045224 GO:0003700
Amo13g5148 341 MobiDBLite consensus disorder prediction 240 260 - -
Amo13g5148 341 SMART HOX_1 59 120 IPR001356 GO:0003677
Amo13g5148 341 ProSitePatterns 'Homeobox' domain signature. 91 114 IPR017970 GO:0000981|GO:0006355
Amo13g5148 341 MobiDBLite consensus disorder prediction 1 33 - -
Amo13g5148 341 Pfam Homeobox associated leucine zipper 116 158 IPR003106 GO:0006355|GO:0043565
Amo13g5148 341 PRINTS Lambda-repressor HTH signature 87 96 IPR000047 GO:0003677
Amo13g5148 341 PRINTS Lambda-repressor HTH signature 96 112 IPR000047 GO:0003677
Amo13g5148 341 MobiDBLite consensus disorder prediction 239 260 - -
Amo13g5148 341 ProSiteProfiles 'Homeobox' domain profile. 56 116 IPR001356 GO:0003677
Amo13g5148 341 SUPERFAMILY Homeodomain-like 44 118 IPR009057 -
Amo13g5148 341 Pfam Homeodomain 61 114 IPR001356 GO:0003677
Amo13g5148 341 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-6-LIKE 1 333 - -
Amo13g5148 341 CDD homeodomain 61 117 IPR001356 GO:0003677
Amo13g5148 341 Gene3D - 55 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g5148 Amo-Chr13 151263379 151265995 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g5148 1 337 Homeobox Transcription Factor Family AT2G22430 43.923 1.94e-74 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Amo13g5148 Homeodomain 5.5e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g5148 K09338 - gmx:100796213 425.631
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g5148 13 151263379 151265995 Amo20g1080 20 19787719 19791461 PCT
Amo13g5148 13 151263379 151265995 Amo10g0644 10 7840179 7843624 PCT