Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g5147 ATGAAGCCACACTTTATGCCTCAAACGTTATCCTCTGTTTCGCCGCTCATGGGTTTTCTTCCCAGAAAACTAGTGCTACTGCAACCGCAACTGCAACATCAGAGTGAGCATATGATTATGAACACAGTATCACATAGCCCTAGCCCTAGCCCAGGCCCAGGCCCAGGCCCAGCACCTTCTCCTTCCCCTCTTCAATCATCACTGTCACTCCCTATCCCCATCCCGCCAAAGTTCCCTTTCCCTTTAATCCCTATCCGTGATGAAGGGTTTCACGTGCATCTTCTTCAACTTGGCATGATTATCATGGCCGGCACCGTTGGAATCGCGATGCTTCTATGTGCCGTCTCCTTGATCCGAAGGATCTGTTGTTCCTGGAGGCATAACCGCACGGGAGGAAACACGCCTATACTGTTCCATGTTAATGGAGATTCTGCTGTTTCAGGTTCGGATTTCGATGACGATGAGGGAGCCTTGGTTGATCACCCTATATGGTTCATCCGCACGGTGGGGCTGCAGCAATCGGTTATAGATTCCATCACAGTGTTTGTTTACAGAAAAGGCGAGAGGCTAATTGATGGTTCAGATTGCTCTGTTTGCCTCGCTGAGTTTCAAGAAAACGACTCTCTCAGGCTGTTACCAAAGTGCAGTCACGCCTTTCACATCCCTTGCATTGACACGTGGCTTAGATCGCACAAGAATTGCCCTCTCTGCCGCGCACCCGTTCTTCATGATTCCGGTACCGCAACTTCTGTTAGTACGGAGGTGATAGTTCCCGAGGCTGATTCAAATGGTTCTGGTGAGAATCAAGAAAATGGTGAGAGTAGTTCAGTGAGGAATATTGGAGATGAGGATGATGGGGGTGAAGATGGAGAAACCCTAGAAAAGATGAATAGGCACAGAGATGCTTCGATTACACAACCAATGAGGAGGTCGGTTTCCATGGATTCATCATCCATATTTCGTGATTTGAATTCTGATGATCAAGATGACAAAATCACCAATTCAAGTTCAAGAATATACAAACTGGCTTCAATAGCATTTCAGAAGAGGCCTAGAAGCCCTTTTTCACATAACAGGAAATGCTCCACTTCTACACACTCTAGGAGCCACAGTTCAACTCTCCCTTTGTAG 1131 0.4721 MKPHFMPQTLSSVSPLMGFLPRKLVLLQPQLQHQSEHMIMNTVSHSPSPSPGPGPGPAPSPSPLQSSLSLPIPIPPKFPFPLIPIRDEGFHVHLLQLGMIIMAGTVGIAMLLCAVSLIRRICCSWRHNRTGGNTPILFHVNGDSAVSGSDFDDDEGALVDHPIWFIRTVGLQQSVIDSITVFVYRKGERLIDGSDCSVCLAEFQENDSLRLLPKCSHAFHIPCIDTWLRSHKNCPLCRAPVLHDSGTATSVSTEVIVPEADSNGSGENQENGESSSVRNIGDEDDGGEDGETLEKMNRHRDASITQPMRRSVSMDSSSIFRDLNSDDQDDKITNSSSRIYKLASIAFQKRPRSPFSHNRKCSTSTHSRSHSSTLPL* 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g5147 376 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 170 246 IPR013083 -
Amo13g5147 376 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 71 338 IPR044675 -
Amo13g5147 376 ProSiteProfiles Zinc finger RING-type profile. 196 238 IPR001841 -
Amo13g5147 376 MobiDBLite consensus disorder prediction 259 276 - -
Amo13g5147 376 PANTHER RING-H2 FINGER PROTEIN ATL54 71 338 - -
Amo13g5147 376 MobiDBLite consensus disorder prediction 345 376 - -
Amo13g5147 376 SMART ring_2 196 237 IPR001841 -
Amo13g5147 376 MobiDBLite consensus disorder prediction 291 305 - -
Amo13g5147 376 CDD RING-H2_PA-TM-RING 195 238 - -
Amo13g5147 376 Pfam Ring finger domain 195 238 IPR001841 -
Amo13g5147 376 SUPERFAMILY RING/U-box 184 246 - -
Amo13g5147 376 MobiDBLite consensus disorder prediction 259 332 - -
Amo13g5147 376 MobiDBLite consensus disorder prediction 41 66 - -
Amo13g5147 376 MobiDBLite consensus disorder prediction 357 376 - -
Amo13g5147 376 MobiDBLite consensus disorder prediction 48 66 - -
Amo13g5147 376 MobiDBLite consensus disorder prediction 306 321 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g5147 Amo-Chr13 151244245 151245734 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g5147 94 288 C3H Transcription Factor Family AT1G72220 45.641 4.06e-40 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g5147 - - adu:107481823 642.114